miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
409 3' -57.5 AC_000011.1 + 35082 0.66 0.468404
Target:  5'- --aGCCaCCGUGGAacaucuCGAGAACCguaUCACCu -3'
miRNA:   3'- uggCGG-GGUACCU------GUUCUUGG---GGUGG- -5'
409 3' -57.5 AC_000011.1 + 33826 0.69 0.322242
Target:  5'- gGCCGaUCCCGUucgcGGACuauGAuUCCCACCg -3'
miRNA:   3'- -UGGC-GGGGUA----CCUGuu-CUuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 31012 0.69 0.30655
Target:  5'- cCCGUCCCGUcGACccccGGucCCCCACCc -3'
miRNA:   3'- uGGCGGGGUAcCUGu---UCuuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 27201 0.67 0.438377
Target:  5'- aGCUGCCCgA-GGAgCAcccucAGGGCCCgGCCc -3'
miRNA:   3'- -UGGCGGGgUaCCU-GU-----UCUUGGGgUGG- -5'
409 3' -57.5 AC_000011.1 + 26639 0.66 0.499452
Target:  5'- cGCCGCCC--UGGuguacCAGGAAauuCCCCAgCCc -3'
miRNA:   3'- -UGGCGGGguACCu----GUUCUU---GGGGU-GG- -5'
409 3' -57.5 AC_000011.1 + 26480 0.7 0.2699
Target:  5'- uGCCGCCCa--GGACu---ACUCCACCc -3'
miRNA:   3'- -UGGCGGGguaCCUGuucuUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 25833 0.66 0.499452
Target:  5'- cUCGUCCCAucuacugugUGGuCGagcGGGACCCCgACCc -3'
miRNA:   3'- uGGCGGGGU---------ACCuGU---UCUUGGGG-UGG- -5'
409 3' -57.5 AC_000011.1 + 25769 0.69 0.297418
Target:  5'- cCCGCUCgAccacacaguagaugGGACGAGAccggacgauucccgaACCCCACCa -3'
miRNA:   3'- uGGCGGGgUa-------------CCUGUUCU---------------UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 25270 0.66 0.468404
Target:  5'- gACC-CCCCuUGG-CGgcuGAACCCuCGCCu -3'
miRNA:   3'- -UGGcGGGGuACCuGUu--CUUGGG-GUGG- -5'
409 3' -57.5 AC_000011.1 + 24640 0.7 0.262326
Target:  5'- uCUGCCCCAggcGGuucucguGCAAGAugCCCAUg -3'
miRNA:   3'- uGGCGGGGUa--CC-------UGUUCUugGGGUGg -5'
409 3' -57.5 AC_000011.1 + 23453 0.71 0.243187
Target:  5'- aACCGCCCCGcc-GCcc-AGCCCCGCCa -3'
miRNA:   3'- -UGGCGGGGUaccUGuucUUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 22958 0.66 0.488997
Target:  5'- gGCUGCUagcgcuaagaUgAUGGugAAGAACCCUAUg -3'
miRNA:   3'- -UGGCGG----------GgUACCugUUCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 22311 0.66 0.468404
Target:  5'- gGCCuugGCUCCcucGGugAAGAagACCCCGCa -3'
miRNA:   3'- -UGG---CGGGGua-CCugUUCU--UGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 21595 0.68 0.381804
Target:  5'- gUCGCCCCA-GGugGAa---CCCACCc -3'
miRNA:   3'- uGGCGGGGUaCCugUUcuugGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 21530 1.12 0.000217
Target:  5'- gACCGCCCCAUGGACAAGAACCCCACCa -3'
miRNA:   3'- -UGGCGGGGUACCUGUUCUUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 20734 0.66 0.448265
Target:  5'- -gCGCCcaCCAUGcGcCAGGGccagcccuACCCCGCCa -3'
miRNA:   3'- ugGCGG--GGUAC-CuGUUCU--------UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 19871 0.69 0.338527
Target:  5'- uACCGCUCCAugcuccUGGGCAAcGGGCgCUACg -3'
miRNA:   3'- -UGGCGGGGU------ACCUGUU-CUUGgGGUGg -5'
409 3' -57.5 AC_000011.1 + 19812 0.75 0.118963
Target:  5'- cGCUGgaUCCCAUGGACAAcguGAACCCCuucaACCa -3'
miRNA:   3'- -UGGC--GGGGUACCUGUU---CUUGGGG----UGG- -5'
409 3' -57.5 AC_000011.1 + 18490 0.68 0.390891
Target:  5'- cGCUGCgcuucgugCCCGUGGACcgcGAGGACaaCACCu -3'
miRNA:   3'- -UGGCG--------GGGUACCUG---UUCUUGggGUGG- -5'
409 3' -57.5 AC_000011.1 + 18313 0.67 0.409482
Target:  5'- uGCUGCCCCAgUGGGCGuacauGCacaUCGCCg -3'
miRNA:   3'- -UGGCGGGGU-ACCUGUucu--UGg--GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.