miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
409 3' -57.5 AC_000011.1 + 4946 0.67 0.418982
Target:  5'- uCC-CCCCAgGGAUAGGAGCUCCu-- -3'
miRNA:   3'- uGGcGGGGUaCCUGUUCUUGGGGugg -5'
409 3' -57.5 AC_000011.1 + 19871 0.69 0.338527
Target:  5'- uACCGCUCCAugcuccUGGGCAAcGGGCgCUACg -3'
miRNA:   3'- -UGGCGGGGU------ACCUGUU-CUUGgGGUGg -5'
409 3' -57.5 AC_000011.1 + 21595 0.68 0.381804
Target:  5'- gUCGCCCCA-GGugGAa---CCCACCc -3'
miRNA:   3'- uGGCGGGGUaCCugUUcuugGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 14638 0.68 0.381804
Target:  5'- aGCCGCCUCAgcaaccugcUGGGCAuucgcaAGAggcaGCCCUuCCa -3'
miRNA:   3'- -UGGCGGGGU---------ACCUGU------UCU----UGGGGuGG- -5'
409 3' -57.5 AC_000011.1 + 15785 0.68 0.381804
Target:  5'- cAUCGCCCgGcGGcACcGGAGcacCCCCGCCa -3'
miRNA:   3'- -UGGCGGGgUaCC-UGuUCUU---GGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 18490 0.68 0.390891
Target:  5'- cGCUGCgcuucgugCCCGUGGACcgcGAGGACaaCACCu -3'
miRNA:   3'- -UGGCG--------GGGUACCUG---UUCUUGggGUGG- -5'
409 3' -57.5 AC_000011.1 + 12859 0.67 0.400118
Target:  5'- aGCCGCgCCC-UGGGcCAGGAcgACCCgggcaACCu -3'
miRNA:   3'- -UGGCG-GGGuACCU-GUUCU--UGGGg----UGG- -5'
409 3' -57.5 AC_000011.1 + 18313 0.67 0.409482
Target:  5'- uGCUGCCCCAgUGGGCGuacauGCacaUCGCCg -3'
miRNA:   3'- -UGGCGGGGU-ACCUGUucu--UGg--GGUGG- -5'
409 3' -57.5 AC_000011.1 + 18036 0.67 0.409482
Target:  5'- cCCGCCCCucuacaGUGGcUAAGc-CCCUGCCg -3'
miRNA:   3'- uGGCGGGG------UACCuGUUCuuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 10724 0.69 0.330311
Target:  5'- gGCUGCCCCGUcGuuucCAAGA-CCCCAUa -3'
miRNA:   3'- -UGGCGGGGUAcCu---GUUCUuGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 31012 0.69 0.30655
Target:  5'- cCCGUCCCGUcGACccccGGucCCCCACCc -3'
miRNA:   3'- uGGCGGGGUAcCUGu---UCuuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 25769 0.69 0.297418
Target:  5'- cCCGCUCgAccacacaguagaugGGACGAGAccggacgauucccgaACCCCACCa -3'
miRNA:   3'- uGGCGGGgUa-------------CCUGUUCU---------------UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 17836 0.78 0.076998
Target:  5'- uGCCuCCCC-UGGACAAGcggggcgagaagcGACCCCGCCc -3'
miRNA:   3'- -UGGcGGGGuACCUGUUC-------------UUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 19812 0.75 0.118963
Target:  5'- cGCUGgaUCCCAUGGACAAcguGAACCCCuucaACCa -3'
miRNA:   3'- -UGGC--GGGGUACCUGUU---CUUGGGG----UGG- -5'
409 3' -57.5 AC_000011.1 + 16568 0.74 0.141348
Target:  5'- cGCCGCgCCGgggguucaagcgcgaGGGCGAGGaucuguACCCCACCa -3'
miRNA:   3'- -UGGCGgGGUa--------------CCUGUUCU------UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 23453 0.71 0.243187
Target:  5'- aACCGCCCCGcc-GCcc-AGCCCCGCCa -3'
miRNA:   3'- -UGGCGGGGUaccUGuucUUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 9809 0.71 0.243187
Target:  5'- aGCCGCUCCAcGGGCAccuccuCCUCGCCc -3'
miRNA:   3'- -UGGCGGGGUaCCUGUucuu--GGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 16153 0.71 0.249652
Target:  5'- uACgGCCCUgcgGUGGugAAGGaggaaagaaaGCCCCGCa -3'
miRNA:   3'- -UGgCGGGG---UACCugUUCU----------UGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 26480 0.7 0.2699
Target:  5'- uGCCGCCCa--GGACu---ACUCCACCc -3'
miRNA:   3'- -UGGCGGGguaCCUGuucuUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 4091 0.7 0.28412
Target:  5'- cCCGUCCCGggGGugGAGGuaGCUCCAUUg -3'
miRNA:   3'- uGGCGGGGUa-CCugUUCU--UGGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.