miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
409 3' -57.5 AC_000011.1 + 4756 0.74 0.140952
Target:  5'- uAUCGCCCCgcagGUGGACAuGAuCCCCcCCu -3'
miRNA:   3'- -UGGCGGGG----UACCUGUuCUuGGGGuGG- -5'
409 3' -57.5 AC_000011.1 + 4637 0.66 0.448265
Target:  5'- uCCGCCCCAaauucauuaaaaUGGcCuauGAugACCUCACCc -3'
miRNA:   3'- uGGCGGGGU------------ACCuGuu-CU--UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 35082 0.66 0.468404
Target:  5'- --aGCCaCCGUGGAacaucuCGAGAACCguaUCACCu -3'
miRNA:   3'- uggCGG-GGUACCU------GUUCUUGG---GGUGG- -5'
409 3' -57.5 AC_000011.1 + 25833 0.66 0.499452
Target:  5'- cUCGUCCCAucuacugugUGGuCGagcGGGACCCCgACCc -3'
miRNA:   3'- uGGCGGGGU---------ACCuGU---UCUUGGGG-UGG- -5'
409 3' -57.5 AC_000011.1 + 15982 0.7 0.256258
Target:  5'- uGCCGCCgCCGUGGccgcGCGucuccGggUCCUGCCg -3'
miRNA:   3'- -UGGCGG-GGUACC----UGUu----CuuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 24640 0.7 0.262326
Target:  5'- uCUGCCCCAggcGGuucucguGCAAGAugCCCAUg -3'
miRNA:   3'- uGGCGGGGUa--CC-------UGUUCUugGGGUGg -5'
409 3' -57.5 AC_000011.1 + 8553 0.7 0.276937
Target:  5'- uGCCGCCCCugccuccGGGCcccGAGccGCCCCuGCCg -3'
miRNA:   3'- -UGGCGGGGua-----CCUG---UUCu-UGGGG-UGG- -5'
409 3' -57.5 AC_000011.1 + 10401 0.69 0.30655
Target:  5'- cGCgCGCCUCAcGGGCcAGaccGugCCCACCa -3'
miRNA:   3'- -UG-GCGGGGUaCCUGuUC---UugGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 4682 0.68 0.346891
Target:  5'- -aCGCCCCcgGGAuCGAGGGuaccuuugucCCCCAguCCg -3'
miRNA:   3'- ugGCGGGGuaCCU-GUUCUU----------GGGGU--GG- -5'
409 3' -57.5 AC_000011.1 + 8424 0.67 0.428615
Target:  5'- cACa-CCCCAgGGGCAcGGGACCCUGCa -3'
miRNA:   3'- -UGgcGGGGUaCCUGU-UCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 17301 0.68 0.385422
Target:  5'- cGCCGCCgCCgGUGGugGuGGcgacgcaucccguuCCCCGCCa -3'
miRNA:   3'- -UGGCGG-GG-UACCugUuCUu-------------GGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 33826 0.69 0.322242
Target:  5'- gGCCGaUCCCGUucgcGGACuauGAuUCCCACCg -3'
miRNA:   3'- -UGGC-GGGGUA----CCUGuu-CUuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 6416 0.73 0.171269
Target:  5'- -aCGCCUCugcUGGACuaauGAGCCCCugCg -3'
miRNA:   3'- ugGCGGGGu--ACCUGuu--CUUGGGGugG- -5'
409 3' -57.5 AC_000011.1 + 7426 0.67 0.40854
Target:  5'- cGCCGCCCaggucaucaacaaCcgGGcCGAGGuGCCCCaACCu -3'
miRNA:   3'- -UGGCGGG-------------GuaCCuGUUCU-UGGGG-UGG- -5'
409 3' -57.5 AC_000011.1 + 7162 0.72 0.207281
Target:  5'- cGCCcuCCCCGUGGAgAAGGGCUgCugCg -3'
miRNA:   3'- -UGGc-GGGGUACCUgUUCUUGGgGugG- -5'
409 3' -57.5 AC_000011.1 + 9446 0.69 0.322242
Target:  5'- uGCgGCCCCGcgaGGACGGGcgcGCCgUCACCg -3'
miRNA:   3'- -UGgCGGGGUa--CCUGUUCu--UGG-GGUGG- -5'
409 3' -57.5 AC_000011.1 + 17997 0.67 0.409482
Target:  5'- gGCCGCgUgGUGGGCA--GACCCaguuuCACCg -3'
miRNA:   3'- -UGGCGgGgUACCUGUucUUGGG-----GUGG- -5'
409 3' -57.5 AC_000011.1 + 4143 0.66 0.458275
Target:  5'- uCCaCCCCcgGGACGGGcucAugCCCAUg -3'
miRNA:   3'- uGGcGGGGuaCCUGUUC---UugGGGUGg -5'
409 3' -57.5 AC_000011.1 + 10259 0.71 0.249652
Target:  5'- cACCGCaCCAUGcuCGAGGACCUCGCg -3'
miRNA:   3'- -UGGCGgGGUACcuGUUCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 8500 0.7 0.262326
Target:  5'- cGCCGCCgcuucuaaCCAUGGAaGAGGcaccgcccccgucGCCCCAgCCg -3'
miRNA:   3'- -UGGCGG--------GGUACCUgUUCU-------------UGGGGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.