Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
409 | 3' | -57.5 | AC_000011.1 | + | 25833 | 0.66 | 0.499452 |
Target: 5'- cUCGUCCCAucuacugugUGGuCGagcGGGACCCCgACCc -3' miRNA: 3'- uGGCGGGGU---------ACCuGU---UCUUGGGG-UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 4143 | 0.66 | 0.458275 |
Target: 5'- uCCaCCCCcgGGACGGGcucAugCCCAUg -3' miRNA: 3'- uGGcGGGGuaCCUGUUC---UugGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 4637 | 0.66 | 0.448265 |
Target: 5'- uCCGCCCCAaauucauuaaaaUGGcCuauGAugACCUCACCc -3' miRNA: 3'- uGGCGGGGU------------ACCuGuu-CU--UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 7511 | 0.66 | 0.488997 |
Target: 5'- aACUGCCCCAcGu-CAAGGGCCguCCGCg -3' miRNA: 3'- -UGGCGGGGUaCcuGUUCUUGG--GGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 7748 | 0.66 | 0.488997 |
Target: 5'- cUCGCCCUccagcucaaAUGGgaucgcuggcACGGGGACCCCcgcACCu -3' miRNA: 3'- uGGCGGGG---------UACC----------UGUUCUUGGGG---UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 35082 | 0.66 | 0.468404 |
Target: 5'- --aGCCaCCGUGGAacaucuCGAGAACCguaUCACCu -3' miRNA: 3'- uggCGG-GGUACCU------GUUCUUGG---GGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 22958 | 0.66 | 0.488997 |
Target: 5'- gGCUGCUagcgcuaagaUgAUGGugAAGAACCCUAUg -3' miRNA: 3'- -UGGCGG----------GgUACCugUUCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 25270 | 0.66 | 0.468404 |
Target: 5'- gACC-CCCCuUGG-CGgcuGAACCCuCGCCu -3' miRNA: 3'- -UGGcGGGGuACCuGUu--CUUGGG-GUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 22311 | 0.66 | 0.468404 |
Target: 5'- gGCCuugGCUCCcucGGugAAGAagACCCCGCa -3' miRNA: 3'- -UGG---CGGGGua-CCugUUCU--UGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 26639 | 0.66 | 0.499452 |
Target: 5'- cGCCGCCC--UGGuguacCAGGAAauuCCCCAgCCc -3' miRNA: 3'- -UGGCGGGguACCu----GUUCUU---GGGGU-GG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 12475 | 0.66 | 0.478646 |
Target: 5'- -gUGCCCCG-GGGCcagGAGGACUaCACCa -3' miRNA: 3'- ugGCGGGGUaCCUG---UUCUUGGgGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 11358 | 0.66 | 0.477617 |
Target: 5'- gGCCugauGCaCCUGUGGGaccugcuggaggcCAucgugcAGAACCCCACCa -3' miRNA: 3'- -UGG----CG-GGGUACCU-------------GU------UCUUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 20734 | 0.66 | 0.448265 |
Target: 5'- -gCGCCcaCCAUGcGcCAGGGccagcccuACCCCGCCa -3' miRNA: 3'- ugGCGG--GGUAC-CuGUUCU--------UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 11898 | 0.66 | 0.447271 |
Target: 5'- aGCCGCCgggCCuUGGAgGcggcggcAGGACCCUACg -3' miRNA: 3'- -UGGCGG---GGuACCUgU-------UCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 18036 | 0.67 | 0.409482 |
Target: 5'- cCCGCCCCucuacaGUGGcUAAGc-CCCUGCCg -3' miRNA: 3'- uGGCGGGG------UACCuGUUCuuGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 18313 | 0.67 | 0.409482 |
Target: 5'- uGCUGCCCCAgUGGGCGuacauGCacaUCGCCg -3' miRNA: 3'- -UGGCGGGGU-ACCUGUucu--UGg--GGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 12859 | 0.67 | 0.400118 |
Target: 5'- aGCCGCgCCC-UGGGcCAGGAcgACCCgggcaACCu -3' miRNA: 3'- -UGGCG-GGGuACCU-GUUCU--UGGGg----UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 7426 | 0.67 | 0.40854 |
Target: 5'- cGCCGCCCaggucaucaacaaCcgGGcCGAGGuGCCCCaACCu -3' miRNA: 3'- -UGGCGGG-------------GuaCCuGUUCU-UGGGG-UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 8424 | 0.67 | 0.428615 |
Target: 5'- cACa-CCCCAgGGGCAcGGGACCCUGCa -3' miRNA: 3'- -UGgcGGGGUaCCUGU-UCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 17997 | 0.67 | 0.409482 |
Target: 5'- gGCCGCgUgGUGGGCA--GACCCaguuuCACCg -3' miRNA: 3'- -UGGCGgGgUACCUGUucUUGGG-----GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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