Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
409 | 3' | -57.5 | AC_000011.1 | + | 21530 | 1.12 | 0.000217 |
Target: 5'- gACCGCCCCAUGGACAAGAACCCCACCa -3' miRNA: 3'- -UGGCGGGGUACCUGUUCUUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 17836 | 0.78 | 0.076998 |
Target: 5'- uGCCuCCCC-UGGACAAGcggggcgagaagcGACCCCGCCc -3' miRNA: 3'- -UGGcGGGGuACCUGUUC-------------UUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 19812 | 0.75 | 0.118963 |
Target: 5'- cGCUGgaUCCCAUGGACAAcguGAACCCCuucaACCa -3' miRNA: 3'- -UGGC--GGGGUACCUGUU---CUUGGGG----UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 4756 | 0.74 | 0.140952 |
Target: 5'- uAUCGCCCCgcagGUGGACAuGAuCCCCcCCu -3' miRNA: 3'- -UGGCGGGG----UACCUGUuCUuGGGGuGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 16568 | 0.74 | 0.141348 |
Target: 5'- cGCCGCgCCGgggguucaagcgcgaGGGCGAGGaucuguACCCCACCa -3' miRNA: 3'- -UGGCGgGGUa--------------CCUGUUCU------UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 6416 | 0.73 | 0.171269 |
Target: 5'- -aCGCCUCugcUGGACuaauGAGCCCCugCg -3' miRNA: 3'- ugGCGGGGu--ACCUGuu--CUUGGGGugG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 7162 | 0.72 | 0.207281 |
Target: 5'- cGCCcuCCCCGUGGAgAAGGGCUgCugCg -3' miRNA: 3'- -UGGc-GGGGUACCUgUUCUUGGgGugG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 23453 | 0.71 | 0.243187 |
Target: 5'- aACCGCCCCGcc-GCcc-AGCCCCGCCa -3' miRNA: 3'- -UGGCGGGGUaccUGuucUUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 9809 | 0.71 | 0.243187 |
Target: 5'- aGCCGCUCCAcGGGCAccuccuCCUCGCCc -3' miRNA: 3'- -UGGCGGGGUaCCUGUucuu--GGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 10259 | 0.71 | 0.249652 |
Target: 5'- cACCGCaCCAUGcuCGAGGACCUCGCg -3' miRNA: 3'- -UGGCGgGGUACcuGUUCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 16153 | 0.71 | 0.249652 |
Target: 5'- uACgGCCCUgcgGUGGugAAGGaggaaagaaaGCCCCGCa -3' miRNA: 3'- -UGgCGGGG---UACCugUUCU----------UGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 15982 | 0.7 | 0.256258 |
Target: 5'- uGCCGCCgCCGUGGccgcGCGucuccGggUCCUGCCg -3' miRNA: 3'- -UGGCGG-GGUACC----UGUu----CuuGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 8500 | 0.7 | 0.262326 |
Target: 5'- cGCCGCCgcuucuaaCCAUGGAaGAGGcaccgcccccgucGCCCCAgCCg -3' miRNA: 3'- -UGGCGG--------GGUACCUgUUCU-------------UGGGGU-GG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 24640 | 0.7 | 0.262326 |
Target: 5'- uCUGCCCCAggcGGuucucguGCAAGAugCCCAUg -3' miRNA: 3'- uGGCGGGGUa--CC-------UGUUCUugGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 26480 | 0.7 | 0.2699 |
Target: 5'- uGCCGCCCa--GGACu---ACUCCACCc -3' miRNA: 3'- -UGGCGGGguaCCUGuucuUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 8553 | 0.7 | 0.276937 |
Target: 5'- uGCCGCCCCugccuccGGGCcccGAGccGCCCCuGCCg -3' miRNA: 3'- -UGGCGGGGua-----CCUG---UUCu-UGGGG-UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 4091 | 0.7 | 0.28412 |
Target: 5'- cCCGUCCCGggGGugGAGGuaGCUCCAUUg -3' miRNA: 3'- uGGCGGGGUa-CCugUUCU--UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 25769 | 0.69 | 0.297418 |
Target: 5'- cCCGCUCgAccacacaguagaugGGACGAGAccggacgauucccgaACCCCACCa -3' miRNA: 3'- uGGCGGGgUa-------------CCUGUUCU---------------UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 10401 | 0.69 | 0.30655 |
Target: 5'- cGCgCGCCUCAcGGGCcAGaccGugCCCACCa -3' miRNA: 3'- -UG-GCGGGGUaCCUGuUC---UugGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 31012 | 0.69 | 0.30655 |
Target: 5'- cCCGUCCCGUcGACccccGGucCCCCACCc -3' miRNA: 3'- uGGCGGGGUAcCUGu---UCuuGGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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