Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
409 | 3' | -57.5 | AC_000011.1 | + | 8424 | 0.67 | 0.428615 |
Target: 5'- cACa-CCCCAgGGGCAcGGGACCCUGCa -3' miRNA: 3'- -UGgcGGGGUaCCUGU-UCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 35082 | 0.66 | 0.468404 |
Target: 5'- --aGCCaCCGUGGAacaucuCGAGAACCguaUCACCu -3' miRNA: 3'- uggCGG-GGUACCU------GUUCUUGG---GGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 7511 | 0.66 | 0.488997 |
Target: 5'- aACUGCCCCAcGu-CAAGGGCCguCCGCg -3' miRNA: 3'- -UGGCGGGGUaCcuGUUCUUGG--GGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 33826 | 0.69 | 0.322242 |
Target: 5'- gGCCGaUCCCGUucgcGGACuauGAuUCCCACCg -3' miRNA: 3'- -UGGC-GGGGUA----CCUGuu-CUuGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 6416 | 0.73 | 0.171269 |
Target: 5'- -aCGCCUCugcUGGACuaauGAGCCCCugCg -3' miRNA: 3'- ugGCGGGGu--ACCUGuu--CUUGGGGugG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 9809 | 0.71 | 0.243187 |
Target: 5'- aGCCGCUCCAcGGGCAccuccuCCUCGCCc -3' miRNA: 3'- -UGGCGGGGUaCCUGUucuu--GGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 26639 | 0.66 | 0.499452 |
Target: 5'- cGCCGCCC--UGGuguacCAGGAAauuCCCCAgCCc -3' miRNA: 3'- -UGGCGGGguACCu----GUUCUU---GGGGU-GG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 12475 | 0.66 | 0.478646 |
Target: 5'- -gUGCCCCG-GGGCcagGAGGACUaCACCa -3' miRNA: 3'- ugGCGGGGUaCCUG---UUCUUGGgGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 16153 | 0.71 | 0.249652 |
Target: 5'- uACgGCCCUgcgGUGGugAAGGaggaaagaaaGCCCCGCa -3' miRNA: 3'- -UGgCGGGG---UACCugUUCU----------UGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 31012 | 0.69 | 0.30655 |
Target: 5'- cCCGUCCCGUcGACccccGGucCCCCACCc -3' miRNA: 3'- uGGCGGGGUAcCUGu---UCuuGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 10724 | 0.69 | 0.330311 |
Target: 5'- gGCUGCCCCGUcGuuucCAAGA-CCCCAUa -3' miRNA: 3'- -UGGCGGGGUAcCu---GUUCUuGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 19871 | 0.69 | 0.338527 |
Target: 5'- uACCGCUCCAugcuccUGGGCAAcGGGCgCUACg -3' miRNA: 3'- -UGGCGGGGU------ACCUGUU-CUUGgGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 21595 | 0.68 | 0.381804 |
Target: 5'- gUCGCCCCA-GGugGAa---CCCACCc -3' miRNA: 3'- uGGCGGGGUaCCugUUcuugGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 14638 | 0.68 | 0.381804 |
Target: 5'- aGCCGCCUCAgcaaccugcUGGGCAuucgcaAGAggcaGCCCUuCCa -3' miRNA: 3'- -UGGCGGGGU---------ACCUGU------UCU----UGGGGuGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 4946 | 0.67 | 0.418982 |
Target: 5'- uCC-CCCCAgGGAUAGGAGCUCCu-- -3' miRNA: 3'- uGGcGGGGUaCCUGUUCUUGGGGugg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 27201 | 0.67 | 0.438377 |
Target: 5'- aGCUGCCCgA-GGAgCAcccucAGGGCCCgGCCc -3' miRNA: 3'- -UGGCGGGgUaCCU-GU-----UCUUGGGgUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 11898 | 0.66 | 0.447271 |
Target: 5'- aGCCGCCgggCCuUGGAgGcggcggcAGGACCCUACg -3' miRNA: 3'- -UGGCGG---GGuACCUgU-------UCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 20734 | 0.66 | 0.448265 |
Target: 5'- -gCGCCcaCCAUGcGcCAGGGccagcccuACCCCGCCa -3' miRNA: 3'- ugGCGG--GGUAC-CuGUUCU--------UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 22311 | 0.66 | 0.468404 |
Target: 5'- gGCCuugGCUCCcucGGugAAGAagACCCCGCa -3' miRNA: 3'- -UGG---CGGGGua-CCugUUCU--UGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 11358 | 0.66 | 0.477617 |
Target: 5'- gGCCugauGCaCCUGUGGGaccugcuggaggcCAucgugcAGAACCCCACCa -3' miRNA: 3'- -UGG----CG-GGGUACCU-------------GU------UCUUGGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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