miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
411 3' -60.8 AC_000011.1 + 8469 0.66 0.341285
Target:  5'- cGCGCGCCgGGCGgcaggggCG-GCuCGgGGCc -3'
miRNA:   3'- -CGCGUGGgCCGCa------GCaCGuGCgUCGu -5'
411 3' -60.8 AC_000011.1 + 16995 0.66 0.333177
Target:  5'- aGCGCgugccgcgguaGCCCGGCGUgGggaugauggaaGgAUGCAGCGc -3'
miRNA:   3'- -CGCG-----------UGGGCCGCAgCa----------CgUGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 15927 0.66 0.333177
Target:  5'- cGCGCgGCCaCGGCGgCG-GCA-GCGGCc -3'
miRNA:   3'- -CGCG-UGG-GCCGCaGCaCGUgCGUCGu -5'
411 3' -60.8 AC_000011.1 + 15909 0.66 0.325212
Target:  5'- -aGCaugGCCCuGCGUccCGUGCgccuggcccuGCGCAGCAa -3'
miRNA:   3'- cgCG---UGGGcCGCA--GCACG----------UGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 22599 0.66 0.324423
Target:  5'- cGCGCACCCGGUGcacucccaguucUUGUGggcgaucugggaaUGCGCGuGCAc -3'
miRNA:   3'- -CGCGUGGGCCGC------------AGCAC-------------GUGCGU-CGU- -5'
411 3' -60.8 AC_000011.1 + 18139 0.66 0.320501
Target:  5'- gGUGCcCCCGG-GUCGcGCGCgggccacggccaccgGCGGCAg -3'
miRNA:   3'- -CGCGuGGGCCgCAGCaCGUG---------------CGUCGU- -5'
411 3' -60.8 AC_000011.1 + 13882 0.66 0.319721
Target:  5'- uGCGUACCCGGaggguccuccucccuCGUacgagagCGUG-AUGCAGCAg -3'
miRNA:   3'- -CGCGUGGGCC---------------GCA-------GCACgUGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 18392 0.66 0.307431
Target:  5'- aGCGUccugUCCGGCGaUGUGCAUguacgcccacugggGCAGCAu -3'
miRNA:   3'- -CGCGu---GGGCCGCaGCACGUG--------------CGUCGU- -5'
411 3' -60.8 AC_000011.1 + 10186 0.67 0.294774
Target:  5'- gGgGCGCCgGGCGcgagguccUCGaGCAUGguGCGg -3'
miRNA:   3'- -CgCGUGGgCCGC--------AGCaCGUGCguCGU- -5'
411 3' -60.8 AC_000011.1 + 9946 0.67 0.280406
Target:  5'- aGCGCgucgucgccgACCUGGCGcUCGUccaGCcccaGCGCGGCu -3'
miRNA:   3'- -CGCG----------UGGGCCGC-AGCA---CG----UGCGUCGu -5'
411 3' -60.8 AC_000011.1 + 17093 0.67 0.273434
Target:  5'- cCGCACCagGGCGgcagggGUGguUGCAGCGg -3'
miRNA:   3'- cGCGUGGg-CCGCag----CACguGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 15561 0.67 0.259907
Target:  5'- aCGCAacacCCCGuGCG-CGUGCGCG-GGCAc -3'
miRNA:   3'- cGCGU----GGGC-CGCaGCACGUGCgUCGU- -5'
411 3' -60.8 AC_000011.1 + 22189 0.67 0.259907
Target:  5'- aCGCACCCGGgcuUGUgGuUGCAauCGCAGUg -3'
miRNA:   3'- cGCGUGGGCC---GCAgC-ACGU--GCGUCGu -5'
411 3' -60.8 AC_000011.1 + 24043 0.67 0.259245
Target:  5'- gGCGCcgggACCCagguugaaaagGGCGUCG-GCgcgggugcgguugGCGCGGCAg -3'
miRNA:   3'- -CGCG----UGGG-----------CCGCAGCaCG-------------UGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 21464 0.68 0.240647
Target:  5'- aGCGguCCuCGGUGgccagggCGcUGCgGCGCAGCAg -3'
miRNA:   3'- -CGCguGG-GCCGCa------GC-ACG-UGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 5298 0.68 0.222591
Target:  5'- gGCGC-CCUGcGCGUCG-GCcAgGUAGCAa -3'
miRNA:   3'- -CGCGuGGGC-CGCAGCaCG-UgCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 16626 0.68 0.222591
Target:  5'- cGCGCuugaaccCCCGGCG-CG-GCGCcgcggucgGCAGCAc -3'
miRNA:   3'- -CGCGu------GGGCCGCaGCaCGUG--------CGUCGU- -5'
411 3' -60.8 AC_000011.1 + 9385 0.69 0.216834
Target:  5'- gGCGCGCCCGuCcUCGcgggGC-CGCAGCGu -3'
miRNA:   3'- -CGCGUGGGCcGcAGCa---CGuGCGUCGU- -5'
411 3' -60.8 AC_000011.1 + 17140 0.69 0.205702
Target:  5'- cGCGCGCgCGGCaggGUCagagGUGCGCggccGCGGCGg -3'
miRNA:   3'- -CGCGUGgGCCG---CAG----CACGUG----CGUCGU- -5'
411 3' -60.8 AC_000011.1 + 19963 0.7 0.184918
Target:  5'- gGgGCACCUGGaUGUgGaaggGCACGUAGCGc -3'
miRNA:   3'- -CgCGUGGGCC-GCAgCa---CGUGCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.