Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
416 | 3' | -58.1 | AC_000011.1 | + | 16258 | 0.66 | 0.431382 |
Target: 5'- gUGcgCGAGuucgccccccggcGGCGcgugCAGUGGCGcGGGCg -3' miRNA: 3'- -ACuaGCUC-------------CUGCa---GUCGCCGCuCCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 25753 | 0.66 | 0.442069 |
Target: 5'- ---cCGAGGACGaCGGUcuGGCGGcGGCu -3' miRNA: 3'- acuaGCUCCUGCaGUCG--CCGCUcCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 15040 | 0.66 | 0.442069 |
Target: 5'- ------cGGACGUCAccuGCGGCGuGGaGCa -3' miRNA: 3'- acuagcuCCUGCAGU---CGCCGCuCC-CG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 5454 | 0.66 | 0.442069 |
Target: 5'- gGAcUCGGGGGCGUaGGCGuccGCGccgcaguGGGCg -3' miRNA: 3'- aCU-AGCUCCUGCAgUCGC---CGCu------CCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 10959 | 0.66 | 0.442069 |
Target: 5'- cGGUCGuggcuGGAaGUUgcugcuGgGGCGGGGGCa -3' miRNA: 3'- aCUAGCu----CCUgCAGu-----CgCCGCUCCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 18130 | 0.66 | 0.451913 |
Target: 5'- gGGUCGcgcgcGGGccACGgccacCGGCGGCaGGGGCu -3' miRNA: 3'- aCUAGC-----UCC--UGCa----GUCGCCGcUCCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 5418 | 0.66 | 0.461876 |
Target: 5'- gGAcUUGAGGGCGUagagcuuGGgGGCGAGGa- -3' miRNA: 3'- aCU-AGCUCCUGCAg------UCgCCGCUCCcg -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 10684 | 0.66 | 0.470941 |
Target: 5'- cGGuUCGAGGcCGgccggauUCcGCGGCuaacGAGGGCg -3' miRNA: 3'- aCU-AGCUCCuGC-------AGuCGCCG----CUCCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 8489 | 0.66 | 0.471954 |
Target: 5'- cGGcUCGGGGccCGgaggCAGgGGCGgcaGGGGCa -3' miRNA: 3'- aCU-AGCUCCu-GCa---GUCgCCGC---UCCCG- -5' |
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416 | 3' | -58.1 | AC_000011.1 | + | 15683 | 0.66 | 0.482141 |
Target: 5'- -cGUCGAcGGugGUgcgcgaccgCAcGCGGCccuuGAGGGCg -3' miRNA: 3'- acUAGCU-CCugCA---------GU-CGCCG----CUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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