Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
419 | 5' | -54.7 | AC_000011.1 | + | 1077 | 0.68 | 0.424475 |
Target: 5'- gUCCGGGcAGAGGCGgGCAGUccAGCGc- -3' miRNA: 3'- aAGGUUCuUCUCCGU-CGUCG--UCGUcu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 2050 | 0.69 | 0.372737 |
Target: 5'- cUCCAGGAgAGucccaGGGCacgccaacgucgccAGCAGCAGCAGc -3' miRNA: 3'- aAGGUUCU-UC-----UCCG--------------UCGUCGUCGUCu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 2138 | 0.66 | 0.555456 |
Target: 5'- cUCCGgcGGAGGAGG-AGgAGUAGCuGAc -3' miRNA: 3'- aAGGU--UCUUCUCCgUCgUCGUCGuCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 2934 | 0.7 | 0.313736 |
Target: 5'- gUCUcGGuAGAGGC-GCAGUGGCGGAu -3' miRNA: 3'- aAGGuUCuUCUCCGuCGUCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 8220 | 0.68 | 0.441956 |
Target: 5'- gUCCAGGGuccugagacgcugcGGAgucaggucagugGGCAGCGGCGGCGc- -3' miRNA: 3'- aAGGUUCU--------------UCU------------CCGUCGUCGUCGUcu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 8441 | 0.71 | 0.272274 |
Target: 5'- cUUCCAugguuAGAAGcGGCGGCgaggacgcgcgccgGGCGGCAGGg -3' miRNA: 3'- -AAGGU-----UCUUCuCCGUCG--------------UCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 8492 | 0.76 | 0.115755 |
Target: 5'- -cUCGGGGcccGGAGGCAGgGGCGGCAGGg -3' miRNA: 3'- aaGGUUCU---UCUCCGUCgUCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 9871 | 0.67 | 0.498916 |
Target: 5'- -gCgAGGAGGAGGUgcccguggAGCGGCucauGCAGGa -3' miRNA: 3'- aaGgUUCUUCUCCG--------UCGUCGu---CGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 10131 | 0.68 | 0.424475 |
Target: 5'- -gCCGAuGAGGAagugcggcGGCGGCuGGCGGUAGAg -3' miRNA: 3'- aaGGUU-CUUCU--------CCGUCG-UCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 10246 | 0.69 | 0.357075 |
Target: 5'- aUCCAGGu-GAugccGGCGGCGGUGGUGGAg -3' miRNA: 3'- aAGGUUCuuCU----CCGUCGUCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 11902 | 0.71 | 0.274499 |
Target: 5'- -gCCGGGccuuGGAGGCGGCGGCAggacccuacGUAGAa -3' miRNA: 3'- aaGGUUCu---UCUCCGUCGUCGU---------CGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 12782 | 0.79 | 0.071119 |
Target: 5'- gUCCGuGAAGGGggccaccaGCAGCAGCAGCAGGc -3' miRNA: 3'- aAGGUuCUUCUC--------CGUCGUCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 15469 | 0.71 | 0.28202 |
Target: 5'- -cCCAGGGccuuguagacguAGGGGCAGguGCGGCGu- -3' miRNA: 3'- aaGGUUCU------------UCUCCGUCguCGUCGUcu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 15754 | 0.71 | 0.289704 |
Target: 5'- gUCCAcgguGGAGAcgGGC-GCGGCGGCGGGg -3' miRNA: 3'- aAGGUu---CUUCU--CCGuCGUCGUCGUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 15765 | 0.66 | 0.532571 |
Target: 5'- -gCCAAGAGccGGCGGCGGC-GCAu- -3' miRNA: 3'- aaGGUUCUUcuCCGUCGUCGuCGUcu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 15918 | 0.67 | 0.455596 |
Target: 5'- -aCCc-GGAGAcgcgcggccacGGCGGCGGCAGCGGc -3' miRNA: 3'- aaGGuuCUUCU-----------CCGUCGUCGUCGUCu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 17089 | 0.7 | 0.322076 |
Target: 5'- -aCCAGGGcggcAGGGGUgguuGCAGCGGCGGu -3' miRNA: 3'- aaGGUUCU----UCUCCGu---CGUCGUCGUCu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 17884 | 0.71 | 0.278992 |
Target: 5'- gUCC-AGggGAGGCAGCuccuccuccaccuGCGGCAu- -3' miRNA: 3'- aAGGuUCuuCUCCGUCGu------------CGUCGUcu -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 21112 | 0.73 | 0.207936 |
Target: 5'- -gCCGAGAAGGGGguGC-GCAGgUAGAc -3' miRNA: 3'- aaGGUUCUUCUCCguCGuCGUC-GUCU- -5' |
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419 | 5' | -54.7 | AC_000011.1 | + | 21388 | 0.72 | 0.255697 |
Target: 5'- gUCCGAGAacccgaaggggucgaAGAGGUAGCAGguGUucGAg -3' miRNA: 3'- aAGGUUCU---------------UCUCCGUCGUCguCGu-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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