miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
419 5' -54.7 AC_000011.1 + 26010 1.07 0.000631
Target:  5'- cUUCCAAGAAGAGGCAGCAGCAGCAGAa -3'
miRNA:   3'- -AAGGUUCUUCUCCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 2138 0.66 0.555456
Target:  5'- cUCCGgcGGAGGAGG-AGgAGUAGCuGAc -3'
miRNA:   3'- aAGGU--UCUUCUCCgUCgUCGUCGuCU- -5'
419 5' -54.7 AC_000011.1 + 24304 0.66 0.537122
Target:  5'- cUCCGAGGAG-GGCaAGCccguggucagcgacgAGCAGCuGGc -3'
miRNA:   3'- aAGGUUCUUCuCCG-UCG---------------UCGUCGuCU- -5'
419 5' -54.7 AC_000011.1 + 15765 0.66 0.532571
Target:  5'- -gCCAAGAGccGGCGGCGGC-GCAu- -3'
miRNA:   3'- aaGGUUCUUcuCCGUCGUCGuCGUcu -5'
419 5' -54.7 AC_000011.1 + 15918 0.67 0.455596
Target:  5'- -aCCc-GGAGAcgcgcggccacGGCGGCGGCAGCGGc -3'
miRNA:   3'- aaGGuuCUUCU-----------CCGUCGUCGUCGUCu -5'
419 5' -54.7 AC_000011.1 + 8220 0.68 0.441956
Target:  5'- gUCCAGGGuccugagacgcugcGGAgucaggucagugGGCAGCGGCGGCGc- -3'
miRNA:   3'- aAGGUUCU--------------UCU------------CCGUCGUCGUCGUcu -5'
419 5' -54.7 AC_000011.1 + 26167 0.68 0.434708
Target:  5'- cUUCCAgcAGAGucGGgGGCAGgAGCAGGa -3'
miRNA:   3'- -AAGGU--UCUUcuCCgUCGUCgUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 10131 0.68 0.424475
Target:  5'- -gCCGAuGAGGAagugcggcGGCGGCuGGCGGUAGAg -3'
miRNA:   3'- aaGGUU-CUUCU--------CCGUCG-UCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 29556 0.69 0.37555
Target:  5'- -aCCGcagcAGAGGAGGCAGCaaaguuAGCcuuGCAGGu -3'
miRNA:   3'- aaGGU----UCUUCUCCGUCG------UCGu--CGUCU- -5'
419 5' -54.7 AC_000011.1 + 2050 0.69 0.372737
Target:  5'- cUCCAGGAgAGucccaGGGCacgccaacgucgccAGCAGCAGCAGc -3'
miRNA:   3'- aAGGUUCU-UC-----UCCG--------------UCGUCGUCGUCu -5'
419 5' -54.7 AC_000011.1 + 23418 0.8 0.066866
Target:  5'- -gCCGAcGAGAaGCAGCAGCAGCAGAa -3'
miRNA:   3'- aaGGUUcUUCUcCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 8492 0.76 0.115755
Target:  5'- -cUCGGGGcccGGAGGCAGgGGCGGCAGGg -3'
miRNA:   3'- aaGGUUCU---UCUCCGUCgUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 23096 0.73 0.213909
Target:  5'- uUUCUucuuGGGcGGCAGCGGCGGCGGAg -3'
miRNA:   3'- -AAGGuucuUCU-CCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 8441 0.71 0.272274
Target:  5'- cUUCCAugguuAGAAGcGGCGGCgaggacgcgcgccgGGCGGCAGGg -3'
miRNA:   3'- -AAGGU-----UCUUCuCCGUCG--------------UCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 11902 0.71 0.274499
Target:  5'- -gCCGGGccuuGGAGGCGGCGGCAggacccuacGUAGAa -3'
miRNA:   3'- aaGGUUCu---UCUCCGUCGUCGU---------CGUCU- -5'
419 5' -54.7 AC_000011.1 + 26068 0.7 0.305561
Target:  5'- aUCCAc--AGcGGCGGCAGCAGguGGa -3'
miRNA:   3'- aAGGUucuUCuCCGUCGUCGUCguCU- -5'
419 5' -54.7 AC_000011.1 + 10246 0.69 0.357075
Target:  5'- aUCCAGGu-GAugccGGCGGCGGUGGUGGAg -3'
miRNA:   3'- aAGGUUCuuCU----CCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 33874 0.66 0.532571
Target:  5'- -----cGGAGcGGCGGCGGCAGCGa- -3'
miRNA:   3'- aagguuCUUCuCCGUCGUCGUCGUcu -5'
419 5' -54.7 AC_000011.1 + 21112 0.73 0.207936
Target:  5'- -gCCGAGAAGGGGguGC-GCAGgUAGAc -3'
miRNA:   3'- aaGGUUCUUCUCCguCGuCGUC-GUCU- -5'
419 5' -54.7 AC_000011.1 + 25175 0.72 0.235329
Target:  5'- -gCCAGGGagcggugcggcgugcAGAGGUuGCAGCGGCAGu -3'
miRNA:   3'- aaGGUUCU---------------UCUCCGuCGUCGUCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.