miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
419 5' -54.7 AC_000011.1 + 23537 0.67 0.486811
Target:  5'- gUCUggGAcggccgcgucGGAGGUGGCggggcugGGCGGCGGGg -3'
miRNA:   3'- aAGGuuCU----------UCUCCGUCG-------UCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 21450 0.67 0.487906
Target:  5'- -gCCAGGgcGcuGCGGC-GCAGCAGGc -3'
miRNA:   3'- aaGGUUCuuCucCGUCGuCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 9871 0.67 0.498916
Target:  5'- -gCgAGGAGGAGGUgcccguggAGCGGCucauGCAGGa -3'
miRNA:   3'- aaGgUUCUUCUCCG--------UCGUCGu---CGUCU- -5'
419 5' -54.7 AC_000011.1 + 32410 0.66 0.532571
Target:  5'- -aCUGAGAGG-GGCGGCGGCcuuGguGGc -3'
miRNA:   3'- aaGGUUCUUCuCCGUCGUCGu--CguCU- -5'
419 5' -54.7 AC_000011.1 + 17089 0.7 0.322076
Target:  5'- -aCCAGGGcggcAGGGGUgguuGCAGCGGCGGu -3'
miRNA:   3'- aaGGUUCU----UCUCCGu---CGUCGUCGUCu -5'
419 5' -54.7 AC_000011.1 + 2934 0.7 0.313736
Target:  5'- gUCUcGGuAGAGGC-GCAGUGGCGGAu -3'
miRNA:   3'- aAGGuUCuUCUCCGuCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 15754 0.71 0.289704
Target:  5'- gUCCAcgguGGAGAcgGGC-GCGGCGGCGGGg -3'
miRNA:   3'- aAGGUu---CUUCU--CCGuCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 15469 0.71 0.28202
Target:  5'- -cCCAGGGccuuguagacguAGGGGCAGguGCGGCGu- -3'
miRNA:   3'- aaGGUUCU------------UCUCCGUCguCGUCGUcu -5'
419 5' -54.7 AC_000011.1 + 17884 0.71 0.278992
Target:  5'- gUCC-AGggGAGGCAGCuccuccuccaccuGCGGCAu- -3'
miRNA:   3'- aAGGuUCuuCUCCGUCGu------------CGUCGUcu -5'
419 5' -54.7 AC_000011.1 + 21388 0.72 0.255697
Target:  5'- gUCCGAGAacccgaaggggucgaAGAGGUAGCAGguGUucGAg -3'
miRNA:   3'- aAGGUUCU---------------UCUCCGUCGUCguCGu-CU- -5'
419 5' -54.7 AC_000011.1 + 25175 0.72 0.235329
Target:  5'- -gCCAGGGagcggugcggcgugcAGAGGUuGCAGCGGCAGu -3'
miRNA:   3'- aaGGUUCU---------------UCUCCGuCGUCGUCGUCu -5'
419 5' -54.7 AC_000011.1 + 21112 0.73 0.207936
Target:  5'- -gCCGAGAAGGGGguGC-GCAGgUAGAc -3'
miRNA:   3'- aaGGUUCUUCUCCguCGuCGUC-GUCU- -5'
419 5' -54.7 AC_000011.1 + 12782 0.79 0.071119
Target:  5'- gUCCGuGAAGGGggccaccaGCAGCAGCAGCAGGc -3'
miRNA:   3'- aAGGUuCUUCUC--------CGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 33874 0.66 0.532571
Target:  5'- -----cGGAGcGGCGGCGGCAGCGa- -3'
miRNA:   3'- aagguuCUUCuCCGUCGUCGUCGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.