miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
419 5' -54.7 AC_000011.1 + 21450 0.67 0.487906
Target:  5'- -gCCAGGgcGcuGCGGC-GCAGCAGGc -3'
miRNA:   3'- aaGGUUCuuCucCGUCGuCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 23096 0.73 0.213909
Target:  5'- uUUCUucuuGGGcGGCAGCGGCGGCGGAg -3'
miRNA:   3'- -AAGGuucuUCU-CCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 23418 0.8 0.066866
Target:  5'- -gCCGAcGAGAaGCAGCAGCAGCAGAa -3'
miRNA:   3'- aaGGUUcUUCUcCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 23537 0.67 0.486811
Target:  5'- gUCUggGAcggccgcgucGGAGGUGGCggggcugGGCGGCGGGg -3'
miRNA:   3'- aAGGuuCU----------UCUCCGUCG-------UCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 24304 0.66 0.537122
Target:  5'- cUCCGAGGAG-GGCaAGCccguggucagcgacgAGCAGCuGGc -3'
miRNA:   3'- aAGGUUCUUCuCCG-UCG---------------UCGUCGuCU- -5'
419 5' -54.7 AC_000011.1 + 25175 0.72 0.235329
Target:  5'- -gCCAGGGagcggugcggcgugcAGAGGUuGCAGCGGCAGu -3'
miRNA:   3'- aaGGUUCU---------------UCUCCGuCGUCGUCGUCu -5'
419 5' -54.7 AC_000011.1 + 26010 1.07 0.000631
Target:  5'- cUUCCAAGAAGAGGCAGCAGCAGCAGAa -3'
miRNA:   3'- -AAGGUUCUUCUCCGUCGUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 26068 0.7 0.305561
Target:  5'- aUCCAc--AGcGGCGGCAGCAGguGGa -3'
miRNA:   3'- aAGGUucuUCuCCGUCGUCGUCguCU- -5'
419 5' -54.7 AC_000011.1 + 26167 0.68 0.434708
Target:  5'- cUUCCAgcAGAGucGGgGGCAGgAGCAGGa -3'
miRNA:   3'- -AAGGU--UCUUcuCCgUCGUCgUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 29556 0.69 0.37555
Target:  5'- -aCCGcagcAGAGGAGGCAGCaaaguuAGCcuuGCAGGu -3'
miRNA:   3'- aaGGU----UCUUCUCCGUCG------UCGu--CGUCU- -5'
419 5' -54.7 AC_000011.1 + 30920 0.68 0.445083
Target:  5'- aUCCAgucaaugaacuGGAAGAaggugauaagcaGGCAGacuaugcuaCAGCAGCAGAu -3'
miRNA:   3'- aAGGU-----------UCUUCU------------CCGUC---------GUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 31775 0.7 0.322076
Target:  5'- gUCgGGGGAGucGCAGgAGCAGUGGAu -3'
miRNA:   3'- aAGgUUCUUCucCGUCgUCGUCGUCU- -5'
419 5' -54.7 AC_000011.1 + 32410 0.66 0.532571
Target:  5'- -aCUGAGAGG-GGCGGCGGCcuuGguGGc -3'
miRNA:   3'- aaGGUUCUUCuCCGUCGUCGu--CguCU- -5'
419 5' -54.7 AC_000011.1 + 33874 0.66 0.532571
Target:  5'- -----cGGAGcGGCGGCGGCAGCGa- -3'
miRNA:   3'- aagguuCUUCuCCGUCGUCGUCGUcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.