miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
423 3' -53.9 AC_000011.1 + 30613 0.66 0.641419
Target:  5'- gGGCAGCcggagcCGCuuCAGGUGgaaGGGGGUCu -3'
miRNA:   3'- -UCGUCGu-----GUGuuGUCCGCg--UUCUCAG- -5'
423 3' -53.9 AC_000011.1 + 16954 0.66 0.628563
Target:  5'- uGCAGCGCGuaguugggcauCAGCAGGCuggccGCGccguacuugcgccGGGGUCu -3'
miRNA:   3'- uCGUCGUGU-----------GUUGUCCG-----CGU-------------UCUCAG- -5'
423 3' -53.9 AC_000011.1 + 12578 0.66 0.618047
Target:  5'- gGGCaccucGGCAC-CAuCAGGCGCAGGGc-- -3'
miRNA:   3'- -UCG-----UCGUGuGUuGUCCGCGUUCUcag -5'
423 3' -53.9 AC_000011.1 + 10144 0.66 0.606377
Target:  5'- uGCGGCG-GCGGCuGGCGguAGAG-Cg -3'
miRNA:   3'- uCGUCGUgUGUUGuCCGCguUCUCaG- -5'
423 3' -53.9 AC_000011.1 + 6691 0.66 0.606377
Target:  5'- cGUAGuCAUACAGCucGUGCGAGGGg- -3'
miRNA:   3'- uCGUC-GUGUGUUGucCGCGUUCUCag -5'
423 3' -53.9 AC_000011.1 + 10178 0.67 0.560049
Target:  5'- cGGUGGCGgggGCGcCGGGCGCGAG-GUCc -3'
miRNA:   3'- -UCGUCGUg--UGUuGUCCGCGUUCuCAG- -5'
423 3' -53.9 AC_000011.1 + 16276 0.67 0.560049
Target:  5'- cGGCGGCGCguGCAguggcGCGGGCGgAAG-GUg -3'
miRNA:   3'- -UCGUCGUG--UGU-----UGUCCGCgUUCuCAg -5'
423 3' -53.9 AC_000011.1 + 21904 0.67 0.560049
Target:  5'- cAGCAGUuuGgGCAGCgGGGUGUcggggaAGGAGUCg -3'
miRNA:   3'- -UCGUCG--UgUGUUG-UCCGCG------UUCUCAG- -5'
423 3' -53.9 AC_000011.1 + 3886 0.67 0.548607
Target:  5'- gGGuCAGCuCGCc-CAGGCGCu-GGGUCa -3'
miRNA:   3'- -UC-GUCGuGUGuuGUCCGCGuuCUCAG- -5'
423 3' -53.9 AC_000011.1 + 6852 0.67 0.525952
Target:  5'- gAGUcGCGgAUGAaguGGGCGUAGGAGUCu -3'
miRNA:   3'- -UCGuCGUgUGUUg--UCCGCGUUCUCAG- -5'
423 3' -53.9 AC_000011.1 + 7647 0.68 0.514756
Target:  5'- cGGgGGUgACGCAGuagaAGGUGCGGGGGUCc -3'
miRNA:   3'- -UCgUCG-UGUGUUg---UCCGCGUUCUCAG- -5'
423 3' -53.9 AC_000011.1 + 22376 0.68 0.503659
Target:  5'- cGGCGucguGCACGCAGCAGcGCGCGuc-GUUg -3'
miRNA:   3'- -UCGU----CGUGUGUUGUC-CGCGUucuCAG- -5'
423 3' -53.9 AC_000011.1 + 15835 0.68 0.503659
Target:  5'- uGCuGCGCAgGGcCAGGCGCAcGGGa- -3'
miRNA:   3'- uCGuCGUGUgUU-GUCCGCGUuCUCag -5'
423 3' -53.9 AC_000011.1 + 8457 0.68 0.492666
Target:  5'- cGGCGGCgaggacGCGCGcCGGGCGgCAGGGG-Cg -3'
miRNA:   3'- -UCGUCG------UGUGUuGUCCGC-GUUCUCaG- -5'
423 3' -53.9 AC_000011.1 + 5223 0.68 0.492666
Target:  5'- gGGguGCGCGCcgGGCuGGGCGCuugcGAGGGUg -3'
miRNA:   3'- -UCguCGUGUG--UUG-UCCGCG----UUCUCAg -5'
423 3' -53.9 AC_000011.1 + 11420 0.69 0.460382
Target:  5'- cAGCAGguC-CcACAGGUGCAucaggcccAGGGUCa -3'
miRNA:   3'- -UCGUCguGuGuUGUCCGCGU--------UCUCAG- -5'
423 3' -53.9 AC_000011.1 + 17143 0.69 0.460382
Target:  5'- uAGCGcGCGCGCGGCAGG-GUcAGAGg- -3'
miRNA:   3'- -UCGU-CGUGUGUUGUCCgCGuUCUCag -5'
423 3' -53.9 AC_000011.1 + 31049 0.69 0.449871
Target:  5'- gGGgAGCACuaACAGCAGaaGCGCGAGaAGUa -3'
miRNA:   3'- -UCgUCGUG--UGUUGUC--CGCGUUC-UCAg -5'
423 3' -53.9 AC_000011.1 + 29689 0.69 0.439494
Target:  5'- uAGCAGCcccggacaccGCugAuCAGGUGUAGGGGUa -3'
miRNA:   3'- -UCGUCG----------UGugUuGUCCGCGUUCUCAg -5'
423 3' -53.9 AC_000011.1 + 17107 0.69 0.415158
Target:  5'- cGGCGGUACACucuccgcaccaGGGCGgCAGGGGUg -3'
miRNA:   3'- -UCGUCGUGUGuug--------UCCGC-GUUCUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.