miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 293 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143260 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 445 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 777 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143196 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143348 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143170 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143578 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 357 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 675 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143374 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 267 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 839 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143680 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 471 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143741 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 701 1.05 0.0041
Target:  5'- gGUUAGGGCCGCAGCUCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143604 1.05 0.0041
Target:  5'- gGUUAGGGCCGCAGCUCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143464 1.03 0.005721
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 561 1.03 0.005721
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCaAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.