Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4291 | 5' | -56.7 | NC_001716.2 | + | 73 | 0.68 | 0.758266 |
Target: 5'- -gUGGGGgCGgGGUUagggUUAGGGUUAGGg -3' miRNA: 3'- caAUCCCgGCgUCGG----GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 161 | 0.69 | 0.709292 |
Target: 5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 197 | 1.03 | 0.006218 |
Target: 5'- gGUUcGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAuCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 235 | 0.98 | 0.01243 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGaGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCcCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 267 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 293 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 331 | 0.95 | 0.020432 |
Target: 5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3' miRNA: 3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 357 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 419 | 0.95 | 0.020432 |
Target: 5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3' miRNA: 3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 445 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 471 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 497 | 1.03 | 0.005721 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGcUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCaAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 530 | 1.01 | 0.008673 |
Target: 5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3' miRNA: 3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 561 | 1.03 | 0.005721 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGcUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCaAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 605 | 0.95 | 0.019877 |
Target: 5'- gGUUcGGGCCGCAGCCCUAGGGcUAGGg -3' miRNA: 3'- -CAAuCCCGGCGUCGGGAUCCCaAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 649 | 0.95 | 0.020432 |
Target: 5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3' miRNA: 3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 675 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 701 | 1.05 | 0.0041 |
Target: 5'- gGUUAGGGCCGCAGCUCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 734 | 1.01 | 0.008673 |
Target: 5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3' miRNA: 3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 777 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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