miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 152815 0.7 0.679047
Target:  5'- gGUUAGGGUUagAGCUagggUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGG----GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152761 0.7 0.638219
Target:  5'- gGUUAGGGUCaggguUAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGc----GUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152713 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152678 0.69 0.738947
Target:  5'- gGUUAGGGUUagGGUUaggCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGG---GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152618 0.74 0.414913
Target:  5'- gGUUAGGGU--UAGaCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152576 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152522 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152444 0.7 0.658676
Target:  5'- aGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152360 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152318 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152264 0.74 0.414913
Target:  5'- gGUUAGGGU--UAGaCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152222 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152168 0.69 0.729143
Target:  5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152066 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152042 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151982 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151916 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151862 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151826 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151790 0.73 0.478632
Target:  5'- gGUUAGGGuuGgGGUUagggUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----GAUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.