miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 839 1.11 0.001781
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 913 0.71 0.607517
Target:  5'- gGUUAGGGU--UAGgCUUAGGGUUAGGc -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 985 0.67 0.846743
Target:  5'- gGUUAGGGCUaaGGCUaggaUUGGGGUUAcGGu -3'
miRNA:   3'- -CAAUCCCGGcgUCGG----GAUCCCAAU-CC- -5'
4291 5' -56.7 NC_001716.2 + 5940 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagacugagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 5976 0.67 0.83036
Target:  5'- gGUUGGGGUUagauUAGagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGc---GUCggGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6041 0.7 0.689179
Target:  5'- gGUUGGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6113 0.7 0.658676
Target:  5'- gGUUAGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6149 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 6185 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6221 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6257 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6293 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6329 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6371 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagguuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6407 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6443 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6515 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6551 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6623 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6659 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.