miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 143464 1.03 0.005721
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 561 1.03 0.005721
Target:  5'- gGUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 197 1.03 0.006218
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143100 1.03 0.006218
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 734 1.01 0.008673
Target:  5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 530 1.01 0.008673
Target:  5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143433 1.01 0.008673
Target:  5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143637 1.01 0.008673
Target:  5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143138 0.98 0.01243
Target:  5'- gGUUAGGGCCGCAGCCCUAGaGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCcCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 235 0.98 0.01243
Target:  5'- gGUUAGGGCCGCAGCCCUAGaGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCGUCGGGAUCcCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143508 0.95 0.019877
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 605 0.95 0.019877
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGcUAGGg -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCaAUCC- -5'
4291 5' -56.7 NC_001716.2 + 143234 0.95 0.020432
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 143322 0.95 0.020432
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 331 0.95 0.020432
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 419 0.95 0.020432
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 143552 0.95 0.020432
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 649 0.95 0.020432
Target:  5'- gGUUcGGGCCGCAGCCCUAGGGUUAGn -3'
miRNA:   3'- -CAAuCCCGGCGUCGGGAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 7492 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagguuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6911 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.