miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 6185 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 5940 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagacugagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 148842 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagacugagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 149088 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 149274 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagguuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7492 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagguuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6371 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUagguuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6911 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9715 0.74 0.414913
Target:  5'- gGUUAGGGU--UAGaCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152618 0.74 0.414913
Target:  5'- gGUUAGGGU--UAGaCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152264 0.74 0.414913
Target:  5'- gGUUAGGGU--UAGaCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9361 0.74 0.414913
Target:  5'- gGUUAGGGU--UAGaCCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 150677 0.74 0.450706
Target:  5'- gGUUAGGGuuGgGGUUaggcuugagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG---------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151036 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 149885 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 8780 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 8816 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 149921 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 149124 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151107 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.