Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4291 | 5' | -56.7 | NC_001716.2 | + | 148878 | 0.66 | 0.869841 |
Target: 5'- gGUUGGGGUUagacuUAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGc----GUCggGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 6149 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 6875 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 149052 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 149777 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152168 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 9811 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152042 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152066 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152222 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152318 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152360 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152576 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 152815 | 0.7 | 0.679047 |
Target: 5'- gGUUAGGGUUagAGCUagggUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGG----GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 6041 | 0.7 | 0.689179 |
Target: 5'- gGUUGGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 148944 | 0.7 | 0.689179 |
Target: 5'- gGUUGGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 161 | 0.69 | 0.709292 |
Target: 5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 143064 | 0.69 | 0.709292 |
Target: 5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 9265 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 9619 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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