miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 6695 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6731 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6767 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6803 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6839 0.7 0.658676
Target:  5'- gGUUAGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6875 0.66 0.869841
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5'
4291 5' -56.7 NC_001716.2 + 6911 0.78 0.270829
Target:  5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 6947 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7018 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7054 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7090 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7126 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7162 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7198 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7234 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7270 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7306 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7342 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7378 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 7414 0.74 0.459917
Target:  5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.