miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 5' -56.7 NC_001716.2 + 6041 0.7 0.689179
Target:  5'- gGUUGGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 148944 0.7 0.689179
Target:  5'- gGUUGGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151826 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9913 0.7 0.679047
Target:  5'- gGUUAGGGUUagAGCUagggUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGG----GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9781 0.7 0.679047
Target:  5'- gGUUAGGGUUagGGCUagggUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGGcgUCGG----GAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9673 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9457 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9415 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9319 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9163 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151862 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151916 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152576 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152360 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152318 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152222 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152066 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 152042 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 151982 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5'
4291 5' -56.7 NC_001716.2 + 9139 0.7 0.679047
Target:  5'- gGUUAGGGU--UAGaCUUAGGGUUAGGg -3'
miRNA:   3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.