Results 41 - 60 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4297 | 3' | -58.5 | NC_001716.2 | + | 146904 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 146178 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 4247 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUuagaCUGa -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGg---GAU- -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3815 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 4001 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2694 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 146718 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 145597 | 0.8 | 0.146149 |
Target: 5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3893 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3857 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2053 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2017 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUgaaCUUAg -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCG---GGAU- -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1982 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1946 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1910 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3929 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3779 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3671 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3635 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3743 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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