miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4373 5' -50.7 NC_001720.1 + 19410 0.66 0.898257
Target:  5'- cGGCCGgGGccacGAGGGCGucccgcuCGAGAUCCu -3'
miRNA:   3'- aCUGGCgUU----UUUCCGCcc-----GCUUUAGG- -5'
4373 5' -50.7 NC_001720.1 + 21642 0.66 0.890814
Target:  5'- --cCCGCAGGcGGcGuCGGGCGGAGcaggCCg -3'
miRNA:   3'- acuGGCGUUUuUC-C-GCCCGCUUUa---GG- -5'
4373 5' -50.7 NC_001720.1 + 10865 0.66 0.890814
Target:  5'- cGACgCGCGAGAGucGCuGGUGAAcGUCCg -3'
miRNA:   3'- aCUG-GCGUUUUUc-CGcCCGCUU-UAGG- -5'
4373 5' -50.7 NC_001720.1 + 11806 0.66 0.883082
Target:  5'- gUG-UCGCGcuuggGGGAGGCGGGUGGcagCCc -3'
miRNA:   3'- -ACuGGCGU-----UUUUCCGCCCGCUuuaGG- -5'
4373 5' -50.7 NC_001720.1 + 4944 0.66 0.875068
Target:  5'- uUGA-UGCu--GGGGUGGGCGcgGUCUa -3'
miRNA:   3'- -ACUgGCGuuuUUCCGCCCGCuuUAGG- -5'
4373 5' -50.7 NC_001720.1 + 14356 0.67 0.845799
Target:  5'- gUGACUGUAAGAGGGgacugauaguucaGGGUGAcg-CCg -3'
miRNA:   3'- -ACUGGCGUUUUUCCg------------CCCGCUuuaGG- -5'
4373 5' -50.7 NC_001720.1 + 42740 0.67 0.840327
Target:  5'- cGACCGUAAc-AGcCGGGCGGAAa-- -3'
miRNA:   3'- aCUGGCGUUuuUCcGCCCGCUUUagg -5'
4373 5' -50.7 NC_001720.1 + 32207 0.67 0.840327
Target:  5'- gUGGCuUGCAAGAAGGCGuccucauGCGAAcggCCu -3'
miRNA:   3'- -ACUG-GCGUUUUUCCGCc------CGCUUua-GG- -5'
4373 5' -50.7 NC_001720.1 + 11899 0.67 0.831016
Target:  5'- --cCCGagGAGAAGGUGcGGCGGcggcAAUCCg -3'
miRNA:   3'- acuGGCg-UUUUUCCGC-CCGCU----UUAGG- -5'
4373 5' -50.7 NC_001720.1 + 15347 0.67 0.831016
Target:  5'- cUGGCCuuGCGuguuGAGGGUgaGGGUGcuGUCCg -3'
miRNA:   3'- -ACUGG--CGUu---UUUCCG--CCCGCuuUAGG- -5'
4373 5' -50.7 NC_001720.1 + 1042 0.67 0.825318
Target:  5'- uUGGCCGCcAAAuuuuucauugacgucGGaGCGGGUGuuaucGAUCCc -3'
miRNA:   3'- -ACUGGCGuUUU---------------UC-CGCCCGCu----UUAGG- -5'
4373 5' -50.7 NC_001720.1 + 11171 0.67 0.821475
Target:  5'- cGGCUGCAGAGGGuGauGGCGcc-UCCu -3'
miRNA:   3'- aCUGGCGUUUUUC-CgcCCGCuuuAGG- -5'
4373 5' -50.7 NC_001720.1 + 20682 0.68 0.811715
Target:  5'- cGACuCGCAAGAAGGUcagccgccGCGAggAGUCCc -3'
miRNA:   3'- aCUG-GCGUUUUUCCGcc------CGCU--UUAGG- -5'
4373 5' -50.7 NC_001720.1 + 12027 0.68 0.805759
Target:  5'- aGACCGUAAcgGGGGcGCGGGCagcggGAcagguaugcaccaccGGUCCg -3'
miRNA:   3'- aCUGGCGUU--UUUC-CGCCCG-----CU---------------UUAGG- -5'
4373 5' -50.7 NC_001720.1 + 1233 0.68 0.801748
Target:  5'- aGACCGCG---GGGCgucGGGUuucGGGUCCa -3'
miRNA:   3'- aCUGGCGUuuuUCCG---CCCGc--UUUAGG- -5'
4373 5' -50.7 NC_001720.1 + 9925 0.68 0.801748
Target:  5'- aUGACgGUGAccuGGGCGGGCuuaAAGUCg -3'
miRNA:   3'- -ACUGgCGUUuu-UCCGCCCGc--UUUAGg -5'
4373 5' -50.7 NC_001720.1 + 20733 0.69 0.738286
Target:  5'- gGACCGCAca---GCaGGGCGAAG-CCu -3'
miRNA:   3'- aCUGGCGUuuuucCG-CCCGCUUUaGG- -5'
4373 5' -50.7 NC_001720.1 + 33456 0.7 0.693451
Target:  5'- -cGCCGCGAAGAcaucgaagcGGCGGcGCGAcgaGGUCa -3'
miRNA:   3'- acUGGCGUUUUU---------CCGCC-CGCU---UUAGg -5'
4373 5' -50.7 NC_001720.1 + 32609 0.7 0.659094
Target:  5'- aGACCGgGAAugGAGGgaaGGaacuGCGAGAUCCu -3'
miRNA:   3'- aCUGGCgUUU--UUCCg--CC----CGCUUUAGG- -5'
4373 5' -50.7 NC_001720.1 + 22516 0.72 0.577354
Target:  5'- uUGACgauaGCu--GAGGCGGGCacgugcggaucgaGAAAUCCu -3'
miRNA:   3'- -ACUGg---CGuuuUUCCGCCCG-------------CUUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.