Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
489 | 5' | -60.6 | AC_000013.1 | + | 39475 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39205 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39071 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 38936 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39880 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40015 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40419 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40554 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39610 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39745 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40149 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40284 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39340 | 0.66 | 0.376586 |
Target: 5'- cCGGCGcGGGUgcaguggcggcccUCGGCCgccagggGGAGCU-CCg -3' miRNA: 3'- aGCCGC-UCCG-------------AGCUGGa------CCUCGAcGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39270 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39945 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40214 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40349 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 40484 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 39001 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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489 | 5' | -60.6 | AC_000013.1 | + | 38866 | 0.67 | 0.328061 |
Target: 5'- cCGGCagGGGGCgccCGugCUGG-GC-GCCg -3' miRNA: 3'- aGCCG--CUCCGa--GCugGACCuCGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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