miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
491 3' -55.8 AC_000013.1 + 30318 0.66 0.669397
Target:  5'- cGGGGGGCGgaggaggaggaagCggCGGAAAC-CC-CUCCc -3'
miRNA:   3'- -CCCCCCGUa------------Ga-GCUUUUGcGGcGAGG- -5'
491 3' -55.8 AC_000013.1 + 19772 0.66 0.662815
Target:  5'- cGGGcGGaggacGCAUUUCGAGggUcgucgGCCGgUCCg -3'
miRNA:   3'- -CCC-CC-----CGUAGAGCUUuuG-----CGGCgAGG- -5'
491 3' -55.8 AC_000013.1 + 8552 0.66 0.662815
Target:  5'- cGGGGGuGC-UUUCGGggcAGACGaCCGUgCCc -3'
miRNA:   3'- -CCCCC-CGuAGAGCU---UUUGC-GGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 18511 0.66 0.651823
Target:  5'- --cGGGCcacccgUCGAAcGCGCCGCUCa -3'
miRNA:   3'- cccCCCGuag---AGCUUuUGCGGCGAGg -5'
491 3' -55.8 AC_000013.1 + 8695 0.66 0.628693
Target:  5'- aGGcGGGGCAUCUaCGAAGgcacucaaaucguGCGUCacgugacauuGCUCa -3'
miRNA:   3'- -CC-CCCCGUAGA-GCUUU-------------UGCGG----------CGAGg -5'
491 3' -55.8 AC_000013.1 + 1794 0.67 0.564057
Target:  5'- uGGGGGauguUCUUGggGAUGCUuuGCgggCCa -3'
miRNA:   3'- cCCCCCgu--AGAGCuuUUGCGG--CGa--GG- -5'
491 3' -55.8 AC_000013.1 + 17989 0.67 0.564057
Target:  5'- -uGGGGCAUg-CGu---CGCCGCUCg -3'
miRNA:   3'- ccCCCCGUAgaGCuuuuGCGGCGAGg -5'
491 3' -55.8 AC_000013.1 + 30411 0.68 0.542496
Target:  5'- aGGGGGguUUagGGAGGgguuucCGCCGCUUCc -3'
miRNA:   3'- cCCCCCguAGagCUUUU------GCGGCGAGG- -5'
491 3' -55.8 AC_000013.1 + 11952 0.68 0.528627
Target:  5'- cGGGGGGCAuuucuuccuccucuUCUCuGGGAAgGCUuCUUCu -3'
miRNA:   3'- -CCCCCCGU--------------AGAG-CUUUUgCGGcGAGG- -5'
491 3' -55.8 AC_000013.1 + 37697 0.68 0.521214
Target:  5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3'
miRNA:   3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 37730 0.68 0.521214
Target:  5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3'
miRNA:   3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 37763 0.68 0.521214
Target:  5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3'
miRNA:   3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 37796 0.68 0.521214
Target:  5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3'
miRNA:   3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 37829 0.68 0.521214
Target:  5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3'
miRNA:   3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 44266 0.68 0.510694
Target:  5'- cGGGuaaguGGGUcgUgaugaCGGAGGCGCCGgUCCg -3'
miRNA:   3'- -CCC-----CCCGuaGa----GCUUUUGCGGCgAGG- -5'
491 3' -55.8 AC_000013.1 + 13443 0.69 0.478678
Target:  5'- uGGGaGGGCggacgcgGUUUCGcgucGGCGCCGCUUg -3'
miRNA:   3'- -CCC-CCCG-------UAGAGCuu--UUGCGGCGAGg -5'
491 3' -55.8 AC_000013.1 + 18171 0.69 0.458554
Target:  5'- cGGGGcgggaacGGCGUCUgcUGGAccGAcCGCCGCUUCu -3'
miRNA:   3'- -CCCC-------CCGUAGA--GCUU--UU-GCGGCGAGG- -5'
491 3' -55.8 AC_000013.1 + 12149 0.7 0.401981
Target:  5'- cGGGGacGCGUCUguugcggaggaCGAugGCGCCGC-CCg -3'
miRNA:   3'- cCCCC--CGUAGA-----------GCUuuUGCGGCGaGG- -5'
491 3' -55.8 AC_000013.1 + 12686 0.71 0.374966
Target:  5'- cGGGGaggucgugGGCGUCgggaaggaCGggGACGCCGCg-- -3'
miRNA:   3'- -CCCC--------CCGUAGa-------GCuuUUGCGGCGagg -5'
491 3' -55.8 AC_000013.1 + 9011 0.72 0.324733
Target:  5'- aGGGGGGCGcCUCGuguggaccaacGAAGCGCUGUa-- -3'
miRNA:   3'- -CCCCCCGUaGAGC-----------UUUUGCGGCGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.