miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 58415 0.67 0.776813
Target:  5'- -gCGCaGGCGGccagcgcgagCGCGCCCGCaaagGUCAc -3'
miRNA:   3'- ggGCGaCCGCCa---------GUGCGGGUGa---UAGU- -5'
5103 3' -58.5 NC_001798.1 + 113518 0.67 0.776813
Target:  5'- cCCUGgUGGCGG-C-CGCCCAUgagacguUCAg -3'
miRNA:   3'- -GGGCgACCGCCaGuGCGGGUGau-----AGU- -5'
5103 3' -58.5 NC_001798.1 + 35449 0.67 0.768571
Target:  5'- gCCGCUGGCGccgcggcccgucugCugGCCCGCggcccGUCu -3'
miRNA:   3'- gGGCGACCGCca------------GugCGGGUGa----UAGu -5'
5103 3' -58.5 NC_001798.1 + 30820 0.67 0.767649
Target:  5'- aCCCGC-GGaCGGcccCGCGCUCcCUGUCGc -3'
miRNA:   3'- -GGGCGaCC-GCCa--GUGCGGGuGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 142337 0.67 0.767649
Target:  5'- -gCGCUGGUGGg-ACGCCCAUa---- -3'
miRNA:   3'- ggGCGACCGCCagUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 15377 0.67 0.767649
Target:  5'- gCCGUgggcgcGGCGGagGCGCCCACc---- -3'
miRNA:   3'- gGGCGa-----CCGCCagUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 104102 0.67 0.75837
Target:  5'- gCCGcCUGGCGG--GCGCCCGacgacaUAUCc -3'
miRNA:   3'- gGGC-GACCGCCagUGCGGGUg-----AUAGu -5'
5103 3' -58.5 NC_001798.1 + 25253 0.67 0.75837
Target:  5'- aCCCGCagGGCGG-CugGCgCCGCc---- -3'
miRNA:   3'- -GGGCGa-CCGCCaGugCG-GGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 150269 0.67 0.75837
Target:  5'- aCCCGCgcgcGuCGGUCGCGCCUGCc---- -3'
miRNA:   3'- -GGGCGac--C-GCCAGUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 153000 0.67 0.75275
Target:  5'- gCCgGCgcggGGCGGUCGCcggggcggaguccggGCCCGCg--CGg -3'
miRNA:   3'- -GGgCGa---CCGCCAGUG---------------CGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 96162 0.68 0.739499
Target:  5'- aCUCGCcaUGGCGGcCGCGCCCcCg---- -3'
miRNA:   3'- -GGGCG--ACCGCCaGUGCGGGuGauagu -5'
5103 3' -58.5 NC_001798.1 + 153397 0.68 0.739499
Target:  5'- aCCGgUcGCGGUCG-GCCCGCUcgCGc -3'
miRNA:   3'- gGGCgAcCGCCAGUgCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 133032 0.68 0.729926
Target:  5'- gCCgGCcgaGGUGGUCGCGCUCAUgcgCGg -3'
miRNA:   3'- -GGgCGa--CCGCCAGUGCGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 127638 0.68 0.729926
Target:  5'- gCUGCUGGUgcuGGUCuccCGCCU-CUGUCAc -3'
miRNA:   3'- gGGCGACCG---CCAGu--GCGGGuGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 102381 0.68 0.729926
Target:  5'- aCCCGcCUGGCGGUCGgCGgcgauggccCCCACc---- -3'
miRNA:   3'- -GGGC-GACCGCCAGU-GC---------GGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 43118 0.68 0.729926
Target:  5'- gUCGCUuccGGCGGgcgCGCGuCCCGC-GUCAc -3'
miRNA:   3'- gGGCGA---CCGCCa--GUGC-GGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 59679 0.68 0.720271
Target:  5'- gCUCGCgugggGGCGGcgggCACGCCCGuCU-UCGg -3'
miRNA:   3'- -GGGCGa----CCGCCa---GUGCGGGU-GAuAGU- -5'
5103 3' -58.5 NC_001798.1 + 134429 0.68 0.720271
Target:  5'- aCCCGCUGGCccuGUC-CGCgCGC-GUCGc -3'
miRNA:   3'- -GGGCGACCGc--CAGuGCGgGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 8719 0.68 0.710544
Target:  5'- aCUGCUGGCGGccCAUGCgCACgaggaaGUCGu -3'
miRNA:   3'- gGGCGACCGCCa-GUGCGgGUGa-----UAGU- -5'
5103 3' -58.5 NC_001798.1 + 54664 0.68 0.690908
Target:  5'- gCCgGCagccGCGG-CGCGCCCGCUcgCGg -3'
miRNA:   3'- -GGgCGac--CGCCaGUGCGGGUGAuaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.