Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 150949 | 1.09 | 0.002451 |
Target: 5'- cCACUGCAGAGGGAGACAGAGACGGGAg -3' miRNA: 3'- -GUGACGUCUCCCUCUGUCUCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 85820 | 0.78 | 0.26215 |
Target: 5'- --aUGaCGGGGGGGGGCGGGGGCGGGc -3' miRNA: 3'- gugAC-GUCUCCCUCUGUCUCUGCCCu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 32906 | 0.73 | 0.502343 |
Target: 5'- ---gGCAGGGGGAgGugGGGGGgGGGAa -3' miRNA: 3'- gugaCGUCUCCCU-CugUCUCUgCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 60993 | 0.73 | 0.512002 |
Target: 5'- uCGCagGCGGAGGG-GGCGGAuGACGcGGAc -3' miRNA: 3'- -GUGa-CGUCUCCCuCUGUCU-CUGC-CCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 27242 | 0.72 | 0.56133 |
Target: 5'- gGCcGCGG-GGGAGGCGGccGCGGGAc -3' miRNA: 3'- gUGaCGUCuCCCUCUGUCucUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 33139 | 0.72 | 0.541413 |
Target: 5'- cCGC-GCAG-GGGGGcCGGGGAUGGGGg -3' miRNA: 3'- -GUGaCGUCuCCCUCuGUCUCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 114483 | 0.72 | 0.571365 |
Target: 5'- -cCUGCucacGGGGGAGGCccuGGACGGGAc -3' miRNA: 3'- guGACGu---CUCCCUCUGuc-UCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 97522 | 0.72 | 0.521736 |
Target: 5'- cCGCcGCGGAggagGGGGGGCGGAGGCGuGGc -3' miRNA: 3'- -GUGaCGUCU----CCCUCUGUCUCUGC-CCu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 27318 | 0.71 | 0.6017 |
Target: 5'- uGgaGgGGAGGGAGGgGGuGGCGGGGa -3' miRNA: 3'- gUgaCgUCUCCCUCUgUCuCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 18207 | 0.71 | 0.622046 |
Target: 5'- gCGC-GCAGccucgccGGGGGACGGuGGGCGGGAa -3' miRNA: 3'- -GUGaCGUCu------CCCUCUGUC-UCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 78905 | 0.71 | 0.615936 |
Target: 5'- -cCUGCGGAGGucccuggaggaggccGAGGCGGAGugGGa- -3' miRNA: 3'- guGACGUCUCC---------------CUCUGUCUCugCCcu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 150108 | 0.71 | 0.591557 |
Target: 5'- gGCgGCGGAGGaaGAGGCGGAGgacgaggccGCGGGGc -3' miRNA: 3'- gUGaCGUCUCC--CUCUGUCUC---------UGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 48531 | 0.71 | 0.632234 |
Target: 5'- gGCgagggGCgGGAGGGGcGGgAGGGGCGGGAg -3' miRNA: 3'- gUGa----CG-UCUCCCU-CUgUCUCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 86001 | 0.7 | 0.672904 |
Target: 5'- gCGCUggcGCAGGGGGGuGAgcCGGAGACGuGGGc -3' miRNA: 3'- -GUGA---CGUCUCCCU-CU--GUCUCUGC-CCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 136787 | 0.7 | 0.652601 |
Target: 5'- aGCUGCGGAGGaGaAGGCAGcGGACgcgcucgaaGGGAg -3' miRNA: 3'- gUGACGUCUCC-C-UCUGUC-UCUG---------CCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 67699 | 0.7 | 0.672904 |
Target: 5'- aGCgGCGGGcccguGGGAGGCGGGGugGGcGGu -3' miRNA: 3'- gUGaCGUCU-----CCCUCUGUCUCugCC-CU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 27586 | 0.7 | 0.672904 |
Target: 5'- gGCUcCGGGGGaGGGACGGGGAaGGGGg -3' miRNA: 3'- gUGAcGUCUCC-CUCUGUCUCUgCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 85275 | 0.7 | 0.672904 |
Target: 5'- gCGCgagGCuucGGGGGGGCGGGGGcCGGGGu -3' miRNA: 3'- -GUGa--CGuc-UCCCUCUGUCUCU-GCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 81277 | 0.7 | 0.672904 |
Target: 5'- -cUUGCGGGGGGGGAUGGcGGAuCGGGu -3' miRNA: 3'- guGACGUCUCCCUCUGUC-UCU-GCCCu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 101013 | 0.7 | 0.683011 |
Target: 5'- gGC-GCGGAGGGGGGCGGGuuuGACGaGGc -3' miRNA: 3'- gUGaCGUCUCCCUCUGUCU---CUGC-CCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home