miRNA display CGI


Results 41 - 60 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 110262 0.66 0.387366
Target:  5'- cGCaCCGAaaaCCgGCgCGACCUCgGCCu -3'
miRNA:   3'- aCG-GGCUgg-GGgCGgGCUGGGGgCGG- -5'
5104 5' -68.6 NC_001798.1 + 22078 0.66 0.385089
Target:  5'- gGCCCcGCCCCCuuuggggcggagccGCCCGcggaccaacgggGCgaCCUCGCCg -3'
miRNA:   3'- aCGGGcUGGGGG--------------CGGGC------------UG--GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 113005 0.66 0.37981
Target:  5'- aGCuuGGgUCCgGaCCCGGgCCCgCGCCg -3'
miRNA:   3'- aCGggCUgGGGgC-GGGCUgGGG-GCGG- -5'
5104 5' -68.6 NC_001798.1 + 20688 0.66 0.37981
Target:  5'- cGUCCGACggCCCCGUucccuCCGAuuccgUCCCCGUg -3'
miRNA:   3'- aCGGGCUG--GGGGCG-----GGCU-----GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 32104 0.66 0.37981
Target:  5'- gGCCgCGgucGCCgCCGCCUccuccuCCUCCGCCu -3'
miRNA:   3'- aCGG-GC---UGGgGGCGGGcu----GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 85244 0.66 0.37981
Target:  5'- cGCCCG-CCCCC-CCgCGGCCgCgcgggGCCg -3'
miRNA:   3'- aCGGGCuGGGGGcGG-GCUGGgGg----CGG- -5'
5104 5' -68.6 NC_001798.1 + 7415 0.66 0.37981
Target:  5'- -cCCgCGACCCCCa--CGACCCCCacggguGCCc -3'
miRNA:   3'- acGG-GCUGGGGGcggGCUGGGGG------CGG- -5'
5104 5' -68.6 NC_001798.1 + 50423 0.66 0.37981
Target:  5'- cGCCCccCCCCCaccaccgccccGCCUcACCUCCGUCu -3'
miRNA:   3'- aCGGGcuGGGGG-----------CGGGcUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 80581 0.66 0.37981
Target:  5'- gGCCCcccacGCCCUCuaCCGACCCacggGCCa -3'
miRNA:   3'- aCGGGc----UGGGGGcgGGCUGGGgg--CGG- -5'
5104 5' -68.6 NC_001798.1 + 23404 0.66 0.372354
Target:  5'- cGUCgGcguCCUCCGCCUccuCCUCCGCCu -3'
miRNA:   3'- aCGGgCu--GGGGGCGGGcu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 94983 0.66 0.372354
Target:  5'- gUGCaggCGGCggCCGCCUGGgCCCCGCa -3'
miRNA:   3'- -ACGg--GCUGggGGCGGGCUgGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 5399 0.66 0.372354
Target:  5'- gGCCCGuuggucgcgccGCCgCCGCUCcGCCCgCGCg -3'
miRNA:   3'- aCGGGC-----------UGGgGGCGGGcUGGGgGCGg -5'
5104 5' -68.6 NC_001798.1 + 7635 0.66 0.372354
Target:  5'- cGCggaCCGGCCCCCGgaguccCCCGGCUCCgaGUUg -3'
miRNA:   3'- aCG---GGCUGGGGGC------GGGCUGGGGg-CGG- -5'
5104 5' -68.6 NC_001798.1 + 58383 0.66 0.372354
Target:  5'- gGCCUGACggagCCgCGUCaGACCCUCGCg -3'
miRNA:   3'- aCGGGCUG----GGgGCGGgCUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 109769 0.66 0.372354
Target:  5'- cGUCCGACgUCgCGCggCGACCCaCGCCg -3'
miRNA:   3'- aCGGGCUGgGG-GCGg-GCUGGGgGCGG- -5'
5104 5' -68.6 NC_001798.1 + 124278 0.66 0.372354
Target:  5'- gGCaggCGACCCgCCGCCCGcgcaucacgGCCCaCCuGCa -3'
miRNA:   3'- aCGg--GCUGGG-GGCGGGC---------UGGG-GG-CGg -5'
5104 5' -68.6 NC_001798.1 + 146500 0.66 0.372354
Target:  5'- gGgCCGGCaacgCCCCGCgCCGGCCgCgGCg -3'
miRNA:   3'- aCgGGCUG----GGGGCG-GGCUGGgGgCGg -5'
5104 5' -68.6 NC_001798.1 + 32275 0.66 0.371614
Target:  5'- cGCUgGggagagacgagaaACCUCC-CUCGGCCCCCGCg -3'
miRNA:   3'- aCGGgC-------------UGGGGGcGGGCUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 71205 0.66 0.370137
Target:  5'- cGUCCGGCCgucaccggCCUGCugcagcuaggggagCCGcCCUCCGCCg -3'
miRNA:   3'- aCGGGCUGG--------GGGCG--------------GGCuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151517 0.67 0.364998
Target:  5'- cGCCC--CCCCCuCCCG-CUUCCGCUu -3'
miRNA:   3'- aCGGGcuGGGGGcGGGCuGGGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.