Results 21 - 40 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5106 | 3' | -62.7 | NC_001798.1 | + | 130239 | 0.72 | 0.292158 |
Target: 5'- -gCCCGgguCUCCgggcgGCCCGCCACgCCUAGa -3' miRNA: 3'- gaGGGU---GAGGa----CGGGUGGUGgGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 71793 | 0.72 | 0.292158 |
Target: 5'- -aCCCACUgggaCCUGaccCCCACCACCCCg-- -3' miRNA: 3'- gaGGGUGA----GGAC---GGGUGGUGGGGguc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 82526 | 0.72 | 0.279335 |
Target: 5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3' miRNA: 3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 82496 | 0.72 | 0.279335 |
Target: 5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3' miRNA: 3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 91400 | 0.71 | 0.319174 |
Target: 5'- gUCgUugUCCUGCUauaCGCCGCCCCCu- -3' miRNA: 3'- gAGgGugAGGACGG---GUGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 152003 | 0.71 | 0.319174 |
Target: 5'- -cCCCGCUcucgggcuccucCCUGCCUcccucGCC-CCCCCAGa -3' miRNA: 3'- gaGGGUGA------------GGACGGG-----UGGuGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 121707 | 0.71 | 0.326924 |
Target: 5'- gCUCCCGCcgCCgcgacggaggcggcgGCCCACCugUCCCuGg -3' miRNA: 3'- -GAGGGUGa-GGa--------------CGGGUGGugGGGGuC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 69084 | 0.71 | 0.319174 |
Target: 5'- --gCCGCUCUcgGCCCGCCcggaCCCCAGg -3' miRNA: 3'- gagGGUGAGGa-CGGGUGGug--GGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 14716 | 0.71 | 0.333369 |
Target: 5'- uUCCCG-UCCUucaucguuucucGCCCcCCACCCCCAc -3' miRNA: 3'- gAGGGUgAGGA------------CGGGuGGUGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 118274 | 0.71 | 0.333369 |
Target: 5'- -aCCCACacacacccCCUGucCCCGCCcCCCCCAGg -3' miRNA: 3'- gaGGGUGa-------GGAC--GGGUGGuGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 18915 | 0.71 | 0.319174 |
Target: 5'- -aCCCGCUCCUGUCgCugU-CCCCCAa -3' miRNA: 3'- gaGGGUGAGGACGG-GugGuGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 147306 | 0.7 | 0.394681 |
Target: 5'- -cCCCGCUCCcggGCCCGacccUCGCCCCUu- -3' miRNA: 3'- gaGGGUGAGGa--CGGGU----GGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 30864 | 0.7 | 0.378685 |
Target: 5'- gUCCgCGC-CCUgucGCCCACC-CCCCCGu -3' miRNA: 3'- gAGG-GUGaGGA---CGGGUGGuGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 40306 | 0.7 | 0.386628 |
Target: 5'- cCUCCUugUCCcuccccgucggGCgUCACCGCCCCCGc -3' miRNA: 3'- -GAGGGugAGGa----------CG-GGUGGUGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 50803 | 0.7 | 0.386628 |
Target: 5'- -cCCCGCUCCcugggaccGCCCcCUACCCCCc- -3' miRNA: 3'- gaGGGUGAGGa-------CGGGuGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 82321 | 0.7 | 0.386628 |
Target: 5'- -gCCCGgU--UGCCCGCCGCCCCCc- -3' miRNA: 3'- gaGGGUgAggACGGGUGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 136325 | 0.7 | 0.378685 |
Target: 5'- uUUCCACcaCCaGCaCCACCACCCCCc- -3' miRNA: 3'- gAGGGUGa-GGaCG-GGUGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 152121 | 0.7 | 0.370851 |
Target: 5'- -cCCCGCcCCcgaGCCCACCGCCCgCGa -3' miRNA: 3'- gaGGGUGaGGa--CGGGUGGUGGGgGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 114100 | 0.7 | 0.370851 |
Target: 5'- --gCCGCggccaUCCUGCCCACCGgCUCCAu -3' miRNA: 3'- gagGGUG-----AGGACGGGUGGUgGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 105451 | 0.7 | 0.394681 |
Target: 5'- -gCCCGCUCCg--CCGCCGuCUCCCGGg -3' miRNA: 3'- gaGGGUGAGGacgGGUGGU-GGGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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