miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 58939 0.66 0.57511
Target:  5'- --gCCGCUCCcccGCCgACCAgCCUCAGc -3'
miRNA:   3'- gagGGUGAGGa--CGGgUGGUgGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 99536 0.66 0.57511
Target:  5'- -aCCCGCaaCUUGCUgACgACCCCCAa -3'
miRNA:   3'- gaGGGUGa-GGACGGgUGgUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 127773 0.66 0.57511
Target:  5'- -cCCCGCggacCCcGCCCGCgACCCCg-- -3'
miRNA:   3'- gaGGGUGa---GGaCGGGUGgUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 33931 0.67 0.565428
Target:  5'- -aCCCGCgcgCgUGCCUACCuuUCCCUAGc -3'
miRNA:   3'- gaGGGUGa--GgACGGGUGGu-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 5555 0.67 0.565428
Target:  5'- -cCCgCGCUCCcguugGCCCccGCCGgCCCCAa -3'
miRNA:   3'- gaGG-GUGAGGa----CGGG--UGGUgGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 75180 0.67 0.565428
Target:  5'- gCUCgagaCGCUggggGCCCGCCGcCCCCCGGa -3'
miRNA:   3'- -GAGg---GUGAgga-CGGGUGGU-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 58738 0.67 0.564462
Target:  5'- aCUgCCGCcuaucgUCaGCCCGCCgacgacaACCCCCAGg -3'
miRNA:   3'- -GAgGGUGa-----GGaCGGGUGG-------UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 2089 0.67 0.562531
Target:  5'- --aCCACUCCgggggggGCCCGCC-CCCggcgcggcccgcggCCAGg -3'
miRNA:   3'- gagGGUGAGGa------CGGGUGGuGGG--------------GGUC- -5'
5106 3' -62.7 NC_001798.1 + 79684 0.67 0.555788
Target:  5'- gUCCCGaggcggCCUGCgUGCgGCCCCCGc -3'
miRNA:   3'- gAGGGUga----GGACGgGUGgUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 85309 0.67 0.555788
Target:  5'- -gCCCGCggCCcGCCCGCagACCCCaCGGc -3'
miRNA:   3'- gaGGGUGa-GGaCGGGUGg-UGGGG-GUC- -5'
5106 3' -62.7 NC_001798.1 + 58027 0.67 0.555788
Target:  5'- gCUCgCCGCcaUCCgcgGCCgCACCagcACCCCCGc -3'
miRNA:   3'- -GAG-GGUG--AGGa--CGG-GUGG---UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 101508 0.67 0.555788
Target:  5'- gUUCgGCUCCUaGCCC-CC-CCCCCu- -3'
miRNA:   3'- gAGGgUGAGGA-CGGGuGGuGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 34408 0.67 0.555788
Target:  5'- gCUCUCuucuCUCUUccGCCCGCCcCCCCCc- -3'
miRNA:   3'- -GAGGGu---GAGGA--CGGGUGGuGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 3133 0.67 0.546196
Target:  5'- -gCCCGcCUCCgcgcGCCgGCCGCCgCCAc -3'
miRNA:   3'- gaGGGU-GAGGa---CGGgUGGUGGgGGUc -5'
5106 3' -62.7 NC_001798.1 + 110492 0.67 0.546196
Target:  5'- -gCCCAUcgCCa--CCAUCGCCCCCGGg -3'
miRNA:   3'- gaGGGUGa-GGacgGGUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 42670 0.67 0.546196
Target:  5'- cCUCCCACUCCUcGUcgccgggaCCACCGgCgUCGGg -3'
miRNA:   3'- -GAGGGUGAGGA-CG--------GGUGGUgGgGGUC- -5'
5106 3' -62.7 NC_001798.1 + 54476 0.67 0.546196
Target:  5'- -cCCCACUCgaccCCCGCgGCCCCuCGGa -3'
miRNA:   3'- gaGGGUGAGgac-GGGUGgUGGGG-GUC- -5'
5106 3' -62.7 NC_001798.1 + 139590 0.67 0.546196
Target:  5'- gUCCCGa-CCgGCCUGCCGCUCCgGGa -3'
miRNA:   3'- gAGGGUgaGGaCGGGUGGUGGGGgUC- -5'
5106 3' -62.7 NC_001798.1 + 27959 0.67 0.536658
Target:  5'- -cCCCggcGCUCCaGCCgUGCCGCgCCCCGGc -3'
miRNA:   3'- gaGGG---UGAGGaCGG-GUGGUG-GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 153411 0.67 0.536658
Target:  5'- -gCCCGCUCgCgcGCCCAggACCCCCGu -3'
miRNA:   3'- gaGGGUGAG-Ga-CGGGUggUGGGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.