miRNA display CGI


Results 41 - 60 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 7776 0.73 0.087932
Target:  5'- cACCCaCGaCCCACCGCCCC-CgCUGGCGg -3'
miRNA:   3'- -UGGG-GCgGGGUGGCGGGGcG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 9020 0.77 0.051421
Target:  5'- gGCCCCGagaCCCACCGCCCCccgcaGCCagcgcaCGGCGa -3'
miRNA:   3'- -UGGGGCg--GGGUGGCGGGG-----CGG------GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 9631 0.69 0.195327
Target:  5'- --gCCGCCCCcagcACCGCCCCGa--GGCGc -3'
miRNA:   3'- uggGGCGGGG----UGGCGGGGCgggCCGU- -5'
5108 3' -70.9 NC_001798.1 + 12201 0.67 0.254945
Target:  5'- aGCCCUgggGCCCCACgGCCCCGgcauCCaCGaGUg -3'
miRNA:   3'- -UGGGG---CGGGGUGgCGGGGC----GG-GC-CGu -5'
5108 3' -70.9 NC_001798.1 + 14737 0.67 0.254945
Target:  5'- cGCCCCccacCCCCACCcccuaaUCCCGCUCGGg- -3'
miRNA:   3'- -UGGGGc---GGGGUGGc-----GGGGCGGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 14785 0.72 0.110164
Target:  5'- aACgCaCGCUcgggugcgcguaucgCCugCGCCCCGCCCGGCc -3'
miRNA:   3'- -UGgG-GCGG---------------GGugGCGGGGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 15551 0.75 0.068994
Target:  5'- uGCCCgGCCCCGggcgUUGCCgCCGCCgCGGCGg -3'
miRNA:   3'- -UGGGgCGGGGU----GGCGG-GGCGG-GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 18599 0.66 0.272014
Target:  5'- aGCCCC-CCCggguccgcgCGCCGUCCCG-CCGuGCAu -3'
miRNA:   3'- -UGGGGcGGG---------GUGGCGGGGCgGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 19359 0.77 0.045347
Target:  5'- aACCCCGCCCCGcaucaucCCGCCCgCaUCCGGCGa -3'
miRNA:   3'- -UGGGGCGGGGU-------GGCGGG-GcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 21079 0.75 0.072437
Target:  5'- gGCCCCGUCCCcCCGgCCCGuccccccgucccCCCGGCc -3'
miRNA:   3'- -UGGGGCGGGGuGGCgGGGC------------GGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21136 0.74 0.076046
Target:  5'- -gCCCGUCCCcCCGUCCC-CCCGGCc -3'
miRNA:   3'- ugGGGCGGGGuGGCGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21157 0.74 0.079826
Target:  5'- -nCCCGUCCCcCCGUCCC-CCCGGCc -3'
miRNA:   3'- ugGGGCGGGGuGGCGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21185 0.69 0.190952
Target:  5'- cCCCCGUCCCcCCGUCCC-CCCGu-- -3'
miRNA:   3'- uGGGGCGGGGuGGCGGGGcGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 21209 0.69 0.190952
Target:  5'- cCCCCGUCCCcCCGUCCC-CCCGu-- -3'
miRNA:   3'- uGGGGCGGGGuGGCGGGGcGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 21233 0.69 0.190952
Target:  5'- cCCCCGUCCCcCCGUCCC-CCCGu-- -3'
miRNA:   3'- uGGGGCGGGGuGGCGGGGcGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 21257 0.69 0.190952
Target:  5'- cCCCCGUCCCcCCGUCCC-CCCGu-- -3'
miRNA:   3'- uGGGGCGGGGuGGCGGGGcGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 21297 0.78 0.039191
Target:  5'- cCCCCGUCCCcCCGUCCC-CCCGGCc -3'
miRNA:   3'- uGGGGCGGGGuGGCGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21326 0.73 0.087932
Target:  5'- gGCCCCccgGCCCC-CCGgCCC-CCCGGCc -3'
miRNA:   3'- -UGGGG---CGGGGuGGCgGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21358 0.7 0.144844
Target:  5'- cCCCCGgCCCGuccccccggcCCGUCCC-CCCGGCc -3'
miRNA:   3'- uGGGGCgGGGU----------GGCGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21397 0.7 0.144844
Target:  5'- cCCCCGgCCCGuccccccggcCCGUCCC-CCCGGCc -3'
miRNA:   3'- uGGGGCgGGGU----------GGCGGGGcGGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.