miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 3233 0.66 0.298692
Target:  5'- cGCCCCagggcggcgagcacCCCCGCgGCgCCGUagCCGGCGg -3'
miRNA:   3'- -UGGGGc-------------GGGGUGgCGgGGCG--GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 3692 0.69 0.190952
Target:  5'- aGCCa--CCCCAUCGCCuCCGCguCCGGCGu -3'
miRNA:   3'- -UGGggcGGGGUGGCGG-GGCG--GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 3814 0.67 0.266225
Target:  5'- gGCCCgCGCCuCCuCCGCCUcgggCGCCCcccagaggccggGGCGg -3'
miRNA:   3'- -UGGG-GCGG-GGuGGCGGG----GCGGG------------CCGU- -5'
5108 3' -70.9 NC_001798.1 + 3907 0.69 0.190952
Target:  5'- gGCCCCGggccacggcuCCCCGCUGacguaCCCGUCgCGGUAg -3'
miRNA:   3'- -UGGGGC----------GGGGUGGCg----GGGCGG-GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 3982 0.7 0.162676
Target:  5'- gUCCaGCUCgACCGCCggggCCGCCCGGCc -3'
miRNA:   3'- uGGGgCGGGgUGGCGG----GGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 4035 0.69 0.170346
Target:  5'- -gCCgGCCaCCGCCGCgCgGgCCCGGCGg -3'
miRNA:   3'- ugGGgCGG-GGUGGCGgGgC-GGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 4163 0.69 0.174302
Target:  5'- cCCCCGCCUCcucgucguccgcGCCgaggGUCCCGCCCgcGGCGu -3'
miRNA:   3'- uGGGGCGGGG------------UGG----CGGGGCGGG--CCGU- -5'
5108 3' -70.9 NC_001798.1 + 4811 0.66 0.277905
Target:  5'- cCUCCGgCCCACCGUgccaCCCGaaCCCGGg- -3'
miRNA:   3'- uGGGGCgGGGUGGCG----GGGC--GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 4968 0.69 0.186663
Target:  5'- gACCUCgGCCCCGCgGCCCUGCgCGuCGu -3'
miRNA:   3'- -UGGGG-CGGGGUGgCGGGGCGgGCcGU- -5'
5108 3' -70.9 NC_001798.1 + 5019 0.67 0.249454
Target:  5'- uGCUCCGCCgaCAUCGCCuCCGaCCGGgGu -3'
miRNA:   3'- -UGGGGCGGg-GUGGCGG-GGCgGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 5199 0.68 0.19979
Target:  5'- aGCCgCGCUCCguguggacgAUCGCCCCgucGCCUGGCu -3'
miRNA:   3'- -UGGgGCGGGG---------UGGCGGGG---CGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 5310 0.67 0.238764
Target:  5'- cGCCCCGgCUCGCCgggGUUCCGCCCccaGGUg -3'
miRNA:   3'- -UGGGGCgGGGUGG---CGGGGCGGG---CCGu -5'
5108 3' -70.9 NC_001798.1 + 5359 0.73 0.087932
Target:  5'- gGCCCCGCCCCGaCGCCCgcgCGUCCGcGUc -3'
miRNA:   3'- -UGGGGCGGGGUgGCGGG---GCGGGC-CGu -5'
5108 3' -70.9 NC_001798.1 + 5399 0.79 0.032135
Target:  5'- gGCCCguuggucgCGCCgCCGCCGCUCCGCCCGcGCGg -3'
miRNA:   3'- -UGGG--------GCGG-GGUGGCGGGGCGGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 5552 0.72 0.111483
Target:  5'- gGCCCCGCgcucccguuggccCCCGCCgGCCCCaaaggGgCCGGCGa -3'
miRNA:   3'- -UGGGGCG-------------GGGUGG-CGGGG-----CgGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 5602 0.66 0.308239
Target:  5'- cGCCCCGUuggUCCGCgggcgGCUCCGCCCcaaagggGGCGg -3'
miRNA:   3'- -UGGGGCG---GGGUGg----CGGGGCGGG-------CCGU- -5'
5108 3' -70.9 NC_001798.1 + 5732 0.66 0.269686
Target:  5'- cGCCCUGCCCgGggcccgcgucauccCgCGCUCCGCCCcaaagggGGCGg -3'
miRNA:   3'- -UGGGGCGGGgU--------------G-GCGGGGCGGG-------CCGU- -5'
5108 3' -70.9 NC_001798.1 + 5870 0.68 0.206186
Target:  5'- cGCCCUGCCCgggGCCcgcgucaucccgcggGCUCCGCCCcgaGGCGg -3'
miRNA:   3'- -UGGGGCGGGg--UGG---------------CGGGGCGGG---CCGU- -5'
5108 3' -70.9 NC_001798.1 + 7056 0.68 0.213713
Target:  5'- uCCCCGgCCCACC-CCCaaacCCCGGUu -3'
miRNA:   3'- uGGGGCgGGGUGGcGGGgc--GGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 7495 0.72 0.106546
Target:  5'- aGCCCgGUCCCcuaCGCCCCcCUCGGCAg -3'
miRNA:   3'- -UGGGgCGGGGug-GCGGGGcGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.