miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 149677 0.68 0.218536
Target:  5'- gGCCCCggGCUCgggGCCGCCCuCGCgUGGCGc -3'
miRNA:   3'- -UGGGG--CGGGg--UGGCGGG-GCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 149234 0.66 0.315387
Target:  5'- uCCCCGUggCCCGCgggggCGUCgCCGgCCGGCGc -3'
miRNA:   3'- uGGGGCG--GGGUG-----GCGG-GGCgGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 149150 0.72 0.114438
Target:  5'- cCCCUGCCCCcgaGgCGCCUCGgCCGGUg -3'
miRNA:   3'- uGGGGCGGGG---UgGCGGGGCgGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 148552 0.67 0.2611
Target:  5'- cCCCCGCCCCACUuuccCCCCucucuaucaaaguucCCUGGCc -3'
miRNA:   3'- uGGGGCGGGGUGGc---GGGGc--------------GGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 147963 0.66 0.315387
Target:  5'- cACCCCcCCCCAacaaCCCCaaaggcgcguGCCCGGCc -3'
miRNA:   3'- -UGGGGcGGGGUggc-GGGG----------CGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 147932 0.72 0.117188
Target:  5'- -gCCCGUacgCCCACCGCCCCcacGCgCCGGUc -3'
miRNA:   3'- ugGGGCG---GGGUGGCGGGG---CG-GGCCGu -5'
5108 3' -70.9 NC_001798.1 + 147425 0.79 0.033772
Target:  5'- cCCCCGCCgCCGCCGCCCUuuGCCCGcGUc -3'
miRNA:   3'- uGGGGCGG-GGUGGCGGGG--CGGGC-CGu -5'
5108 3' -70.9 NC_001798.1 + 147352 0.68 0.208981
Target:  5'- cCCCCGUCCCGCCGCgCCCcuuCCCu--- -3'
miRNA:   3'- uGGGGCGGGGUGGCG-GGGc--GGGccgu -5'
5108 3' -70.9 NC_001798.1 + 147304 0.67 0.260535
Target:  5'- cGCCCCGCuCCCGggcCCGaCCCuCGCCCc--- -3'
miRNA:   3'- -UGGGGCG-GGGU---GGC-GGG-GCGGGccgu -5'
5108 3' -70.9 NC_001798.1 + 147221 0.67 0.251638
Target:  5'- gGCCCCcggcggagcgcggggGCCCCGggGCCCCgggccGCgCCGGCGg -3'
miRNA:   3'- -UGGGG---------------CGGGGUggCGGGG-----CG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 147198 0.77 0.051421
Target:  5'- cCCCCGCCCgGCgGUCCgGCCCGGg- -3'
miRNA:   3'- uGGGGCGGGgUGgCGGGgCGGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 147068 0.75 0.064122
Target:  5'- cCCCCGCaCCUcggcgGCCGCCCCcUCCGGCGc -3'
miRNA:   3'- uGGGGCG-GGG-----UGGCGGGGcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 146612 0.69 0.174302
Target:  5'- gGCCCaCGCcuCCCGCCGCauuaggccCCCGCgggcauCCGGCGg -3'
miRNA:   3'- -UGGG-GCG--GGGUGGCG--------GGGCG------GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 146004 0.66 0.28999
Target:  5'- gACCaCCGCCgCCACC-CCCCaaacaGCCaaGGCGc -3'
miRNA:   3'- -UGG-GGCGG-GGUGGcGGGG-----CGGg-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 145972 0.68 0.213713
Target:  5'- uACCCCGCgCCCGCaGCCU---CCGGCAg -3'
miRNA:   3'- -UGGGGCG-GGGUGgCGGGgcgGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 145943 0.69 0.182459
Target:  5'- gGCCCCcCCCCACCa-CCCGCCCa--- -3'
miRNA:   3'- -UGGGGcGGGGUGGcgGGGCGGGccgu -5'
5108 3' -70.9 NC_001798.1 + 145891 0.75 0.072437
Target:  5'- cACCCCGaCCgCCGCCGCgCCC-CaCCGGCGg -3'
miRNA:   3'- -UGGGGC-GG-GGUGGCG-GGGcG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 145763 0.76 0.058141
Target:  5'- nACCCCcCCCCGCCGCCCaC-CCCGGgGu -3'
miRNA:   3'- -UGGGGcGGGGUGGCGGG-GcGGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 145729 0.77 0.04435
Target:  5'- gGCCCCGgCCCG-CGCCCCGCCgccacacccaCGGCAc -3'
miRNA:   3'- -UGGGGCgGGGUgGCGGGGCGG----------GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 145621 1.07 0.000243
Target:  5'- gACCCCGCCCCACCGCCCCGCCCGGCAg -3'
miRNA:   3'- -UGGGGCGGGGUGGCGGGGCGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.