miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 154557 0.71 0.122874
Target:  5'- uUCCCGCgCCCGC--CCCCGCgCGGCAg -3'
miRNA:   3'- uGGGGCG-GGGUGgcGGGGCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 154485 0.68 0.218536
Target:  5'- cCCCCGCgggCGCCGCCCCucccCCCGcGCGc -3'
miRNA:   3'- uGGGGCGgg-GUGGCGGGGc---GGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 154439 0.66 0.315387
Target:  5'- aGCCCCgcgcGCCCCcuuccCCGUCCCuccCCCGGa- -3'
miRNA:   3'- -UGGGG----CGGGGu----GGCGGGGc--GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 154337 0.69 0.195327
Target:  5'- cUCCCGCCCCGCCucuuuucCCCCGgggagucaaccCCCGGgGg -3'
miRNA:   3'- uGGGGCGGGGUGGc------GGGGC-----------GGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 153842 0.68 0.227956
Target:  5'- gGCCuCCGgcgccuuCCCC-CCGCCCuCGCUCGGgGg -3'
miRNA:   3'- -UGG-GGC-------GGGGuGGCGGG-GCGGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 153252 0.7 0.143833
Target:  5'- gACCCgCGCgCCGCCGCCgCCGCCUccuccuccuccgcgGGUc -3'
miRNA:   3'- -UGGG-GCGgGGUGGCGG-GGCGGG--------------CCGu -5'
5108 3' -70.9 NC_001798.1 + 153178 0.67 0.260535
Target:  5'- gGCUCCGCCggCCgagGCCGCCCuCG-CCGGUu -3'
miRNA:   3'- -UGGGGCGG--GG---UGGCGGG-GCgGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 152646 0.66 0.283293
Target:  5'- nGCCCCGCCggCGCgGCCCUGaguggugcccgccCCCGGgGa -3'
miRNA:   3'- -UGGGGCGGg-GUGgCGGGGC-------------GGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 152607 0.7 0.149649
Target:  5'- uGCgCCGCCCC-CCGCCgacgcagaugggaguCCcCCCGGCGc -3'
miRNA:   3'- -UGgGGCGGGGuGGCGG---------------GGcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 152376 0.68 0.223451
Target:  5'- cUCCCGCCgggCCGCCGCUCCGUcgcucgcagugCCGGgGu -3'
miRNA:   3'- uGGGGCGG---GGUGGCGGGGCG-----------GGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 152120 0.69 0.186663
Target:  5'- uCCCCGCCCCcgaGCCcaCCGCCC-GCGa -3'
miRNA:   3'- uGGGGCGGGGuggCGG--GGCGGGcCGU- -5'
5108 3' -70.9 NC_001798.1 + 151892 0.67 0.266225
Target:  5'- cACCCCgGCCCC-CCGCCCgcugcuuuuUGUUCGGa- -3'
miRNA:   3'- -UGGGG-CGGGGuGGCGGG---------GCGGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 151094 0.73 0.092273
Target:  5'- cCCCCG-CCCGCC-CCCCGCCCGa-- -3'
miRNA:   3'- uGGGGCgGGGUGGcGGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 151061 0.71 0.138225
Target:  5'- cCCCCGCCCgACCcccgcccgacCCCCGCCCGa-- -3'
miRNA:   3'- uGGGGCGGGgUGGc---------GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 151028 0.71 0.138225
Target:  5'- cCCCCGCCCgACCcccgcccgacCCCCGCCCGa-- -3'
miRNA:   3'- uGGGGCGGGgUGGc---------GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 150995 0.71 0.138225
Target:  5'- cCCCCGCCCgACCcccgcccgacCCCCGCCCGa-- -3'
miRNA:   3'- uGGGGCGGGgUGGc---------GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 150892 0.76 0.054013
Target:  5'- cCCCCGCaCCGCCGcCCCCGCgCCGGg- -3'
miRNA:   3'- uGGGGCGgGGUGGC-GGGGCG-GGCCgu -5'
5108 3' -70.9 NC_001798.1 + 150254 0.69 0.177119
Target:  5'- cGCCCgGCCCUcccgACCcgcgcgcgucggucGCgCCUGCCCGGCc -3'
miRNA:   3'- -UGGGgCGGGG----UGG--------------CG-GGGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 150154 0.71 0.13313
Target:  5'- gACCCgCGCCucuuccgggggcgggCCGCCGCCCCcuCCgCGGCGu -3'
miRNA:   3'- -UGGG-GCGG---------------GGUGGCGGGGc-GG-GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 149799 0.72 0.109119
Target:  5'- cGCgaCGCuCCCACCaGCCCCGCCC-GCAg -3'
miRNA:   3'- -UGggGCG-GGGUGG-CGGGGCGGGcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.