miRNA display CGI


Results 1 - 20 of 378 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 1 0.67 0.238764
Target:  5'- --CCCGCCCCGCCucuuuucCCCCGgggagucaaccCCCGGgGg -3'
miRNA:   3'- ugGGGCGGGGUGGc------GGGGC-----------GGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 101 0.66 0.315387
Target:  5'- aGCCCCgcgcGCCCCcuuccCCGUCCCuccCCCGGa- -3'
miRNA:   3'- -UGGGG----CGGGGu----GGCGGGGc--GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 147 0.68 0.218536
Target:  5'- cCCCCGCgggCGCCGCCCCucccCCCGcGCGc -3'
miRNA:   3'- uGGGGCGgg-GUGGCGGGGc---GGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 219 0.71 0.122874
Target:  5'- uUCCCGCgCCCGC--CCCCGCgCGGCAg -3'
miRNA:   3'- uGGGGCG-GGGUGgcGGGGCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 494 0.76 0.061061
Target:  5'- cGCCCCGCCCCGggggcuucccCCGCCCCucccCCCGcGCc -3'
miRNA:   3'- -UGGGGCGGGGU----------GGCGGGGc---GGGC-CGu -5'
5108 3' -70.9 NC_001798.1 + 689 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 719 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 749 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 779 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 809 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 839 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 869 0.71 0.138225
Target:  5'- cCCCCGCCCgC-CCGacCCCCGCCCGc-- -3'
miRNA:   3'- uGGGGCGGG-GuGGC--GGGGCGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 1187 0.74 0.077914
Target:  5'- cGCCgCCGCCCgccgcggccagCACCGuCCCCGCgCGGCc -3'
miRNA:   3'- -UGG-GGCGGG-----------GUGGC-GGGGCGgGCCGu -5'
5108 3' -70.9 NC_001798.1 + 1354 0.71 0.138225
Target:  5'- aGCUCCGCCggGCCGCCgCGCaCGGCGu -3'
miRNA:   3'- -UGGGGCGGggUGGCGGgGCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 1743 0.67 0.266225
Target:  5'- gUCCCGCgCCGCCGgCCagCGCaCGGCGc -3'
miRNA:   3'- uGGGGCGgGGUGGCgGG--GCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 2044 0.68 0.198441
Target:  5'- uGCCCaggGCCgCCAgcaggcaggacagcCCGCCgCGCUCGGCGg -3'
miRNA:   3'- -UGGGg--CGG-GGU--------------GGCGGgGCGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 2104 0.75 0.065548
Target:  5'- -gCCCGCCCCcggcGCgGCCCgcggccagguccuCGCCCGGCAg -3'
miRNA:   3'- ugGGGCGGGG----UGgCGGG-------------GCGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 2618 0.68 0.204341
Target:  5'- gGCgCCGCCCgGCggCGCCCUGgCCGGg- -3'
miRNA:   3'- -UGgGGCGGGgUG--GCGGGGCgGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 2867 0.66 0.277311
Target:  5'- gGCCUCGCUgCCGCCGgccacgcgcagguCCCCGCgCaGGCGc -3'
miRNA:   3'- -UGGGGCGG-GGUGGC-------------GGGGCGgG-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 3133 0.67 0.238764
Target:  5'- -gCCCGCCuCCGCgCGCCggCCGCcgccaccaccgCCGGCGc -3'
miRNA:   3'- ugGGGCGG-GGUG-GCGG--GGCG-----------GGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.