miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 145621 1.07 0.000243
Target:  5'- gACCCCGCCCCACCGCCCCGCCCGGCAg -3'
miRNA:   3'- -UGGGGCGGGGUGGCGGGGCGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 29032 0.87 0.00874
Target:  5'- gACUCCGCCCCggcgACCGCCCCGCgCCGGCu -3'
miRNA:   3'- -UGGGGCGGGG----UGGCGGGGCG-GGCCGu -5'
5108 3' -70.9 NC_001798.1 + 145414 0.84 0.013398
Target:  5'- cCCCCGCCCgGCCGCcgcgcgccCCCGCCCGGCc -3'
miRNA:   3'- uGGGGCGGGgUGGCG--------GGGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 145456 0.84 0.013398
Target:  5'- cCCCCGCCCgGCCGCcgcgcgccCCCGCCCGGCc -3'
miRNA:   3'- uGGGGCGGGgUGGCG--------GGGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 145498 0.84 0.013398
Target:  5'- cCCCCGCCCgGCCGCcgcgcgccCCCGCCCGGCc -3'
miRNA:   3'- uGGGGCGGGgUGGCG--------GGGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 28962 0.84 0.014445
Target:  5'- gGCgCCGCCCCGCCGCUCCGCCCgccccagggGGCGg -3'
miRNA:   3'- -UGgGGCGGGGUGGCGGGGCGGG---------CCGU- -5'
5108 3' -70.9 NC_001798.1 + 25178 0.82 0.019512
Target:  5'- cCCCCGCCCCGCCgacGCCgCCGCCgCGGCc -3'
miRNA:   3'- uGGGGCGGGGUGG---CGG-GGCGG-GCCGu -5'
5108 3' -70.9 NC_001798.1 + 145540 0.82 0.020006
Target:  5'- cCCCCGCCCgGCCGCCCgcguCGCgCCGGCGc -3'
miRNA:   3'- uGGGGCGGGgUGGCGGG----GCG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 127853 0.81 0.021564
Target:  5'- gGCCCCGCCCCGCCccaCCCCGCCCcacgucaccgggGGCc -3'
miRNA:   3'- -UGGGGCGGGGUGGc--GGGGCGGG------------CCGu -5'
5108 3' -70.9 NC_001798.1 + 54834 0.81 0.02505
Target:  5'- cCCCCGCCgccgacaccaCCGCCGCCgCCGCCUGGCc -3'
miRNA:   3'- uGGGGCGG----------GGUGGCGG-GGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 5399 0.79 0.032135
Target:  5'- gGCCCguuggucgCGCCgCCGCCGCUCCGCCCGcGCGg -3'
miRNA:   3'- -UGGG--------GCGG-GGUGGCGGGGCGGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 25072 0.79 0.032943
Target:  5'- aGCCCCGCCCCgGCCaggGCgCCGCCgGGCGg -3'
miRNA:   3'- -UGGGGCGGGG-UGG---CGgGGCGGgCCGU- -5'
5108 3' -70.9 NC_001798.1 + 147425 0.79 0.033772
Target:  5'- cCCCCGCCgCCGCCGCCCUuuGCCCGcGUc -3'
miRNA:   3'- uGGGGCGG-GGUGGCGGGG--CGGGC-CGu -5'
5108 3' -70.9 NC_001798.1 + 102899 0.79 0.035491
Target:  5'- gAUCCCGgCCUGCCGCCgCCGCUCGGCc -3'
miRNA:   3'- -UGGGGCgGGGUGGCGG-GGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 24736 0.78 0.036292
Target:  5'- cGCCCCGCCgCACgccgacgCGCCCCGCCUGcGCGc -3'
miRNA:   3'- -UGGGGCGGgGUG-------GCGGGGCGGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 21297 0.78 0.039191
Target:  5'- cCCCCGUCCCcCCGUCCC-CCCGGCc -3'
miRNA:   3'- uGGGGCGGGGuGGCGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 22457 0.78 0.040074
Target:  5'- cCCCCGCCCCGCgCGCCCCgaggacuauaucaGCCaGGCGa -3'
miRNA:   3'- uGGGGCGGGGUG-GCGGGG-------------CGGgCCGU- -5'
5108 3' -70.9 NC_001798.1 + 24386 0.78 0.04118
Target:  5'- cCCgCCGCCgCCGCCGCCCCGUugccgUCGGCGg -3'
miRNA:   3'- uGG-GGCGG-GGUGGCGGGGCG-----GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 35741 0.77 0.043268
Target:  5'- cUCCCGCCCgGCCGCccacucCCCGCUCGGCc -3'
miRNA:   3'- uGGGGCGGGgUGGCG------GGGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 145729 0.77 0.04435
Target:  5'- gGCCCCGgCCCG-CGCCCCGCCgccacacccaCGGCAc -3'
miRNA:   3'- -UGGGGCgGGGUgGCGGGGCGG----------GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.