miRNA display CGI


Results 21 - 40 of 378 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 145729 0.77 0.04435
Target:  5'- gGCCCCGgCCCG-CGCCCCGCCgccacacccaCGGCAc -3'
miRNA:   3'- -UGGGGCgGGGUgGCGGGGCGG----------GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 19359 0.77 0.045347
Target:  5'- aACCCCGCCCCGcaucaucCCGCCCgCaUCCGGCGa -3'
miRNA:   3'- -UGGGGCGGGGU-------GGCGGG-GcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 25431 0.77 0.045459
Target:  5'- gGCCgCgCGCUgCGCCGCCCCGCCCcccGGCGg -3'
miRNA:   3'- -UGG-G-GCGGgGUGGCGGGGCGGG---CCGU- -5'
5108 3' -70.9 NC_001798.1 + 75983 0.77 0.047758
Target:  5'- -gCCCGUgCCCGCCGCCCCggGCgCCGGCGg -3'
miRNA:   3'- ugGGGCG-GGGUGGCGGGG--CG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 105245 0.77 0.047758
Target:  5'- cCCUCGCCUCGgCGUCCCGCgCGGCAu -3'
miRNA:   3'- uGGGGCGGGGUgGCGGGGCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 30869 0.77 0.04895
Target:  5'- cGCCCUGUcgCCCACCcCCCCgugGCCCGGCAc -3'
miRNA:   3'- -UGGGGCG--GGGUGGcGGGG---CGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 46393 0.77 0.049435
Target:  5'- cCCCgCGCCgucuggccggcagggCCACCGCCCC-CCCGGCGg -3'
miRNA:   3'- uGGG-GCGG---------------GGUGGCGGGGcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 82408 0.77 0.050171
Target:  5'- cGCCCCuGCCCCAgCCGCCCCuGCCCcaGCc -3'
miRNA:   3'- -UGGGG-CGGGGU-GGCGGGG-CGGGc-CGu -5'
5108 3' -70.9 NC_001798.1 + 33627 0.77 0.050171
Target:  5'- cCCCCGCCCCGgCGCccacCCCGCCC-GCAc -3'
miRNA:   3'- uGGGGCGGGGUgGCG----GGGCGGGcCGU- -5'
5108 3' -70.9 NC_001798.1 + 82438 0.77 0.050171
Target:  5'- cGCCCCuGCCCCAgCCGCCCCuGCCCcaGCc -3'
miRNA:   3'- -UGGGG-CGGGGU-GGCGGGG-CGGGc-CGu -5'
5108 3' -70.9 NC_001798.1 + 82528 0.77 0.050171
Target:  5'- cGCCCCuGCCCCAgCCGCCCCuGCCCcaGCc -3'
miRNA:   3'- -UGGGG-CGGGGU-GGCGGGG-CGGGc-CGu -5'
5108 3' -70.9 NC_001798.1 + 82498 0.77 0.050171
Target:  5'- cGCCCCuGCCCCAgCCGCCCCuGCCCcaGCc -3'
miRNA:   3'- -UGGGG-CGGGGU-GGCGGGG-CGGGc-CGu -5'
5108 3' -70.9 NC_001798.1 + 22864 0.77 0.050171
Target:  5'- gACCgUCGCCCCGCCGCgCgGCCCGGg- -3'
miRNA:   3'- -UGG-GGCGGGGUGGCGgGgCGGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 58095 0.77 0.050171
Target:  5'- gGCCCCGCagggucgCgGCCGCCCaggGCCCGGCGu -3'
miRNA:   3'- -UGGGGCGg------GgUGGCGGGg--CGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 82468 0.77 0.050171
Target:  5'- cGCCCCuGCCCCAgCCGCCCCuGCCCcaGCc -3'
miRNA:   3'- -UGGGG-CGGGGU-GGCGGGG-CGGGc-CGu -5'
5108 3' -70.9 NC_001798.1 + 147198 0.77 0.051421
Target:  5'- cCCCCGCCCgGCgGUCCgGCCCGGg- -3'
miRNA:   3'- uGGGGCGGGgUGgCGGGgCGGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 9020 0.77 0.051421
Target:  5'- gGCCCCGagaCCCACCGCCCCccgcaGCCagcgcaCGGCGa -3'
miRNA:   3'- -UGGGGCg--GGGUGGCGGGG-----CGG------GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 150892 0.76 0.054013
Target:  5'- cCCCCGCaCCGCCGcCCCCGCgCCGGg- -3'
miRNA:   3'- uGGGGCGgGGUGGC-GGGGCG-GGCCgu -5'
5108 3' -70.9 NC_001798.1 + 21469 0.76 0.055356
Target:  5'- cCCCCGCCCguCC-CCCCGgCCGGCc -3'
miRNA:   3'- uGGGGCGGGguGGcGGGGCgGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 145763 0.76 0.058141
Target:  5'- nACCCCcCCCCGCCGCCCaC-CCCGGgGu -3'
miRNA:   3'- -UGGGGcGGGGUGGCGGG-GcGGGCCgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.