miRNA display CGI


Results 41 - 60 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 56365 0.76 0.058141
Target:  5'- uCCCCGCCCCcuccACCGCCcggaucaccugCCGCUCGGUg -3'
miRNA:   3'- uGGGGCGGGG----UGGCGG-----------GGCGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 494 0.76 0.061061
Target:  5'- cGCCCCGCCCCGggggcuucccCCGCCCCucccCCCGcGCc -3'
miRNA:   3'- -UGGGGCGGGGU----------GGCGGGGc---GGGC-CGu -5'
5108 3' -70.9 NC_001798.1 + 139302 0.76 0.061061
Target:  5'- aGCgCCGCgUCGCCGCCCCGCguccgcaucgCCGGCGc -3'
miRNA:   3'- -UGgGGCGgGGUGGCGGGGCG----------GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 137965 0.76 0.061061
Target:  5'- uGCuCCCGCUCCAgCGcCCCCGCCUgGGCGc -3'
miRNA:   3'- -UG-GGGCGGGGUgGC-GGGGCGGG-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 147068 0.75 0.064122
Target:  5'- cCCCCGCaCCUcggcgGCCGCCCCcUCCGGCGc -3'
miRNA:   3'- uGGGGCG-GGG-----UGGCGGGGcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 2104 0.75 0.065548
Target:  5'- -gCCCGCCCCcggcGCgGCCCgcggccagguccuCGCCCGGCAg -3'
miRNA:   3'- ugGGGCGGGG----UGgCGGG-------------GCGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 27624 0.75 0.065708
Target:  5'- uGCCCUGCcgcccgCCCGCCGCCgCCGCCCGccuucGCGc -3'
miRNA:   3'- -UGGGGCG------GGGUGGCGG-GGCGGGC-----CGU- -5'
5108 3' -70.9 NC_001798.1 + 111740 0.75 0.067332
Target:  5'- gGCCCCcgcGCCCC-CgGCCCCGguCCCGGCc -3'
miRNA:   3'- -UGGGG---CGGGGuGgCGGGGC--GGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 50965 0.75 0.067332
Target:  5'- cACCCgGUCCCA-UGCCCCGUCCGcGCAu -3'
miRNA:   3'- -UGGGgCGGGGUgGCGGGGCGGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 15551 0.75 0.068994
Target:  5'- uGCCCgGCCCCGggcgUUGCCgCCGCCgCGGCGg -3'
miRNA:   3'- -UGGGgCGGGGU----GGCGG-GGCGG-GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 145891 0.75 0.072437
Target:  5'- cACCCCGaCCgCCGCCGCgCCC-CaCCGGCGg -3'
miRNA:   3'- -UGGGGC-GG-GGUGGCG-GGGcG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 81905 0.75 0.072437
Target:  5'- uGCUuuGCCCCuuccGCCcgGCCCCGCCuCGGCu -3'
miRNA:   3'- -UGGggCGGGG----UGG--CGGGGCGG-GCCGu -5'
5108 3' -70.9 NC_001798.1 + 72021 0.75 0.072437
Target:  5'- uGCCCCGCCCCAUCGagUuuGCCCuGCGg -3'
miRNA:   3'- -UGGGGCGGGGUGGCg-GggCGGGcCGU- -5'
5108 3' -70.9 NC_001798.1 + 21079 0.75 0.072437
Target:  5'- gGCCCCGUCCCcCCGgCCCGuccccccgucccCCCGGCc -3'
miRNA:   3'- -UGGGGCGGGGuGGCgGGGC------------GGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 21136 0.74 0.076046
Target:  5'- -gCCCGUCCCcCCGUCCC-CCCGGCc -3'
miRNA:   3'- ugGGGCGGGGuGGCGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 48425 0.74 0.076046
Target:  5'- uUCCCGuCCCCGCCGCCCC-CUCGaGUAg -3'
miRNA:   3'- uGGGGC-GGGGUGGCGGGGcGGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 37154 0.74 0.077914
Target:  5'- --gCCGCUCgCGCCGCgCCGCCUGGCGg -3'
miRNA:   3'- uggGGCGGG-GUGGCGgGGCGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 1187 0.74 0.077914
Target:  5'- cGCCgCCGCCCgccgcggccagCACCGuCCCCGCgCGGCc -3'
miRNA:   3'- -UGG-GGCGGG-----------GUGGC-GGGGCGgGCCGu -5'
5108 3' -70.9 NC_001798.1 + 98756 0.74 0.079248
Target:  5'- gACCCCGCCCCccgacgccaacgcgACCGUCgCCGCC-GGCc -3'
miRNA:   3'- -UGGGGCGGGG--------------UGGCGG-GGCGGgCCGu -5'
5108 3' -70.9 NC_001798.1 + 29804 0.74 0.079633
Target:  5'- gACCCCgGCCCCgagcgGCCGCCgCGgcagaccCCCGGCAc -3'
miRNA:   3'- -UGGGG-CGGGG-----UGGCGGgGC-------GGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.