miRNA display CGI


Results 41 - 60 of 378 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 118517 0.66 0.283896
Target:  5'- cUCCCGCaCCC-CCGCguUCCggugucucgcgGCCCGGCGc -3'
miRNA:   3'- uGGGGCG-GGGuGGCG--GGG-----------CGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 23642 0.66 0.283896
Target:  5'- gACCgcgggCCGCCUggagCGCCGCcgggCCCGCgCGGCGg -3'
miRNA:   3'- -UGG-----GGCGGG----GUGGCG----GGGCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 152646 0.66 0.283293
Target:  5'- nGCCCCGCCggCGCgGCCCUGaguggugcccgccCCCGGgGa -3'
miRNA:   3'- -UGGGGCGGg-GUGgCGGGGC-------------GGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 34839 0.66 0.283293
Target:  5'- gGCCCgGgCCggaCCGCCGggcgggggacgccUUCCGCCCGGCGc -3'
miRNA:   3'- -UGGGgC-GG---GGUGGC-------------GGGGCGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 93389 0.66 0.282088
Target:  5'- gACCCCaaggaccacagcaaGCCCUccuuuuACCGCUUCuuucucguGCCCGGCAc -3'
miRNA:   3'- -UGGGG--------------CGGGG------UGGCGGGG--------CGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 40853 0.66 0.280289
Target:  5'- gGCCgaGCCCCGCCGCaggaugaaauacagcUCCGUCagGGCGa -3'
miRNA:   3'- -UGGggCGGGGUGGCG---------------GGGCGGg-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 4811 0.66 0.277905
Target:  5'- cCUCCGgCCCACCGUgccaCCCGaaCCCGGg- -3'
miRNA:   3'- uGGGGCgGGGUGGCG----GGGC--GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 31586 0.66 0.277905
Target:  5'- cCCCCGCgCgGCCgucGCCCCGCgcguCCGGa- -3'
miRNA:   3'- uGGGGCGgGgUGG---CGGGGCG----GGCCgu -5'
5108 3' -70.9 NC_001798.1 + 42997 0.66 0.277905
Target:  5'- cAUCUgGCCCCcgACgGCCaggCCGCCCGGgGg -3'
miRNA:   3'- -UGGGgCGGGG--UGgCGG---GGCGGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 87735 0.66 0.277905
Target:  5'- cCCCCGCCggcccgaaccCCGCgGCCCUGagCCGcGCGg -3'
miRNA:   3'- uGGGGCGG----------GGUGgCGGGGCg-GGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 122378 0.66 0.277905
Target:  5'- cGCgCCCGCCCCccgcgGCUGUCCUccgagcugGCCaCGGCc -3'
miRNA:   3'- -UG-GGGCGGGG-----UGGCGGGG--------CGG-GCCGu -5'
5108 3' -70.9 NC_001798.1 + 2867 0.66 0.277311
Target:  5'- gGCCUCGCUgCCGCCGgccacgcgcagguCCCCGCgCaGGCGc -3'
miRNA:   3'- -UGGGGCGG-GGUGGC-------------GGGGCGgG-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 57847 0.66 0.272014
Target:  5'- cACCCUaacagugaugGgCCCGCCuGCCCC-CCUGGCc -3'
miRNA:   3'- -UGGGG----------CgGGGUGG-CGGGGcGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 82320 0.66 0.272014
Target:  5'- gGCCCgGUugCCCGCCGCCCCccacCCCaGUc -3'
miRNA:   3'- -UGGGgCG--GGGUGGCGGGGc---GGGcCGu -5'
5108 3' -70.9 NC_001798.1 + 28374 0.66 0.272014
Target:  5'- uCCCCGCCCgCGgaCGCgCCGCgCGGgAa -3'
miRNA:   3'- uGGGGCGGG-GUg-GCGgGGCGgGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 39833 0.66 0.272014
Target:  5'- uCgUCGgcuCCCCGCCGCgCUGCCgGGCGa -3'
miRNA:   3'- uGgGGC---GGGGUGGCGgGGCGGgCCGU- -5'
5108 3' -70.9 NC_001798.1 + 51972 0.66 0.272014
Target:  5'- cGCgCCC-CCCCACCccgGCCCCgacGCCgCGGUc -3'
miRNA:   3'- -UG-GGGcGGGGUGG---CGGGG---CGG-GCCGu -5'
5108 3' -70.9 NC_001798.1 + 75044 0.66 0.272014
Target:  5'- cCCCCGUCgCCGCCGagguCCCCGCCUc--- -3'
miRNA:   3'- uGGGGCGG-GGUGGC----GGGGCGGGccgu -5'
5108 3' -70.9 NC_001798.1 + 18599 0.66 0.272014
Target:  5'- aGCCCC-CCCggguccgcgCGCCGUCCCG-CCGuGCAu -3'
miRNA:   3'- -UGGGGcGGG---------GUGGCGGGGCgGGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 30201 0.66 0.272014
Target:  5'- gUCCCGCCUCA-CGCCCCGCgCCc--- -3'
miRNA:   3'- uGGGGCGGGGUgGCGGGGCG-GGccgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.