miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 1730 0.66 0.905674
Target:  5'- cGGUGCgGCGCAGGuccCGCGCcGcCGGc -3'
miRNA:   3'- -CCGCGgCGCGUCUu--GUGUGuCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 130418 0.66 0.905674
Target:  5'- cGGCGacgaGCGcCAGGGCgACGCGGACu-- -3'
miRNA:   3'- -CCGCgg--CGC-GUCUUG-UGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 121455 0.66 0.905674
Target:  5'- -cUGCCGCGCGuccccaGCGCGGGCGGg -3'
miRNA:   3'- ccGCGGCGCGUcuug--UGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 94768 0.66 0.905674
Target:  5'- cGGCucuuGUCGCGCgAGGACAUAgAGACc-- -3'
miRNA:   3'- -CCG----CGGCGCG-UCUUGUGUgUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 60216 0.66 0.905674
Target:  5'- gGGCGCUgGUGCuGGACGacgcgcccuccuCGCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGuCUUGU------------GUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 153094 0.66 0.905674
Target:  5'- cGGCGCCGggcccuCGCGGAuauAUACGCGGGg--- -3'
miRNA:   3'- -CCGCGGC------GCGUCU---UGUGUGUCUgcuu -5'
5108 5' -56.2 NC_001798.1 + 139435 0.66 0.899336
Target:  5'- -cCGCCGUGCGGuu--CAgGGACGAGg -3'
miRNA:   3'- ccGCGGCGCGUCuuguGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 86150 0.66 0.899336
Target:  5'- aGCGCaC-CGCGGGGCGCGCAugcGCGAc -3'
miRNA:   3'- cCGCG-GcGCGUCUUGUGUGUc--UGCUu -5'
5108 5' -56.2 NC_001798.1 + 112188 0.66 0.898689
Target:  5'- cGgGCCGCacgucccGCAGGcCGCGCuGGCGGAg -3'
miRNA:   3'- cCgCGGCG-------CGUCUuGUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 147514 0.66 0.897388
Target:  5'- gGGCGCCuGCGUgugucucgugugagAGAGCGCGCcccuCGAAc -3'
miRNA:   3'- -CCGCGG-CGCG--------------UCUUGUGUGucu-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 69008 0.66 0.893431
Target:  5'- cGGCGUCGCGCgcaucguaggcggcGGcGCACGCGGccaccagaaaguuaaACGAc -3'
miRNA:   3'- -CCGCGGCGCG--------------UCuUGUGUGUC---------------UGCUu -5'
5108 5' -56.2 NC_001798.1 + 132671 0.66 0.892763
Target:  5'- gGGCGCUGCgacGCGucGCACGCcGACGc- -3'
miRNA:   3'- -CCGCGGCG---CGUcuUGUGUGuCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 99971 0.66 0.892763
Target:  5'- aGGCGCCcaGCGCcaacgcguccguGGAGCGCAUcaAGACc-- -3'
miRNA:   3'- -CCGCGG--CGCG------------UCUUGUGUG--UCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 44911 0.66 0.892763
Target:  5'- gGGUGCUGUGCgguuggGGAACGCGCcccGAgGAAc -3'
miRNA:   3'- -CCGCGGCGCG------UCUUGUGUGu--CUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 30552 0.66 0.892763
Target:  5'- uGUGCCGUGU-----GCACGGACGAGa -3'
miRNA:   3'- cCGCGGCGCGucuugUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 70232 0.66 0.892763
Target:  5'- --aGCCG-GCGGGcaGCGCGGACGAGc -3'
miRNA:   3'- ccgCGGCgCGUCUugUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 2664 0.66 0.892093
Target:  5'- cGCGCCucccgcgGCGCGGAgGCGgGCGcGGCGAGc -3'
miRNA:   3'- cCGCGG-------CGCGUCU-UGUgUGU-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 47041 0.66 0.891421
Target:  5'- aGGCGCaCGCgGCguuaucgGGGACGCGCaaugccgGGGCGAc -3'
miRNA:   3'- -CCGCG-GCG-CG-------UCUUGUGUG-------UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 68114 0.66 0.88596
Target:  5'- cGGgGCCGCGCAcGGC-CA-AGACGGc -3'
miRNA:   3'- -CCgCGGCGCGUcUUGuGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 28796 0.66 0.88596
Target:  5'- cGGCGgCGCGCGGGuccuccgccGC-CGCGGGCc-- -3'
miRNA:   3'- -CCGCgGCGCGUCU---------UGuGUGUCUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.