Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 153094 | 0.66 | 0.905674 |
Target: 5'- cGGCGCCGggcccuCGCGGAuauAUACGCGGGg--- -3' miRNA: 3'- -CCGCGGC------GCGUCU---UGUGUGUCUgcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 60216 | 0.66 | 0.905674 |
Target: 5'- gGGCGCUgGUGCuGGACGacgcgcccuccuCGCGGGCGGc -3' miRNA: 3'- -CCGCGG-CGCGuCUUGU------------GUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 94768 | 0.66 | 0.905674 |
Target: 5'- cGGCucuuGUCGCGCgAGGACAUAgAGACc-- -3' miRNA: 3'- -CCG----CGGCGCG-UCUUGUGUgUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 121455 | 0.66 | 0.905674 |
Target: 5'- -cUGCCGCGCGuccccaGCGCGGGCGGg -3' miRNA: 3'- ccGCGGCGCGUcuug--UGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 130418 | 0.66 | 0.905674 |
Target: 5'- cGGCGacgaGCGcCAGGGCgACGCGGACu-- -3' miRNA: 3'- -CCGCgg--CGC-GUCUUG-UGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1730 | 0.66 | 0.905674 |
Target: 5'- cGGUGCgGCGCAGGuccCGCGCcGcCGGc -3' miRNA: 3'- -CCGCGgCGCGUCUu--GUGUGuCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 139435 | 0.66 | 0.899336 |
Target: 5'- -cCGCCGUGCGGuu--CAgGGACGAGg -3' miRNA: 3'- ccGCGGCGCGUCuuguGUgUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 86150 | 0.66 | 0.899336 |
Target: 5'- aGCGCaC-CGCGGGGCGCGCAugcGCGAc -3' miRNA: 3'- cCGCG-GcGCGUCUUGUGUGUc--UGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 112188 | 0.66 | 0.898689 |
Target: 5'- cGgGCCGCacgucccGCAGGcCGCGCuGGCGGAg -3' miRNA: 3'- cCgCGGCG-------CGUCUuGUGUGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 147514 | 0.66 | 0.897388 |
Target: 5'- gGGCGCCuGCGUgugucucgugugagAGAGCGCGCcccuCGAAc -3' miRNA: 3'- -CCGCGG-CGCG--------------UCUUGUGUGucu-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 69008 | 0.66 | 0.893431 |
Target: 5'- cGGCGUCGCGCgcaucguaggcggcGGcGCACGCGGccaccagaaaguuaaACGAc -3' miRNA: 3'- -CCGCGGCGCG--------------UCuUGUGUGUC---------------UGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 132671 | 0.66 | 0.892763 |
Target: 5'- gGGCGCUGCgacGCGucGCACGCcGACGc- -3' miRNA: 3'- -CCGCGGCG---CGUcuUGUGUGuCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 99971 | 0.66 | 0.892763 |
Target: 5'- aGGCGCCcaGCGCcaacgcguccguGGAGCGCAUcaAGACc-- -3' miRNA: 3'- -CCGCGG--CGCG------------UCUUGUGUG--UCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 44911 | 0.66 | 0.892763 |
Target: 5'- gGGUGCUGUGCgguuggGGAACGCGCcccGAgGAAc -3' miRNA: 3'- -CCGCGGCGCG------UCUUGUGUGu--CUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 30552 | 0.66 | 0.892763 |
Target: 5'- uGUGCCGUGU-----GCACGGACGAGa -3' miRNA: 3'- cCGCGGCGCGucuugUGUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 70232 | 0.66 | 0.892763 |
Target: 5'- --aGCCG-GCGGGcaGCGCGGACGAGc -3' miRNA: 3'- ccgCGGCgCGUCUugUGUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 2664 | 0.66 | 0.892093 |
Target: 5'- cGCGCCucccgcgGCGCGGAgGCGgGCGcGGCGAGc -3' miRNA: 3'- cCGCGG-------CGCGUCU-UGUgUGU-CUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 47041 | 0.66 | 0.891421 |
Target: 5'- aGGCGCaCGCgGCguuaucgGGGACGCGCaaugccgGGGCGAc -3' miRNA: 3'- -CCGCG-GCG-CG-------UCUUGUGUG-------UCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 28796 | 0.66 | 0.88596 |
Target: 5'- cGGCGgCGCGCGGGuccuccgccGC-CGCGGGCc-- -3' miRNA: 3'- -CCGCgGCGCGUCU---------UGuGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 142114 | 0.66 | 0.88596 |
Target: 5'- gGGCGUCGCuaAcGAGCGCGCugccGGACGc- -3' miRNA: 3'- -CCGCGGCGcgU-CUUGUGUG----UCUGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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