Results 61 - 80 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 22322 | 0.69 | 0.720139 |
Target: 5'- gGGcCGCCGCcacggacGCGG-ACGCGCGGGCGu- -3' miRNA: 3'- -CC-GCGGCG-------CGUCuUGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 70065 | 0.69 | 0.721134 |
Target: 5'- cGCGCCGCGUcgccGAGCGCGCAcGcCGGu -3' miRNA: 3'- cCGCGGCGCGu---CUUGUGUGU-CuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 23884 | 0.69 | 0.721134 |
Target: 5'- gGGCGCCcgagGCGgAGGAgGCGCGGGCc-- -3' miRNA: 3'- -CCGCGG----CGCgUCUUgUGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4134 | 0.69 | 0.740863 |
Target: 5'- gGGCGCCGCcccCGGGGCccuCGCGGGCa-- -3' miRNA: 3'- -CCGCGGCGc--GUCUUGu--GUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 116421 | 0.69 | 0.740863 |
Target: 5'- aGGC-CCGCGCGGccGACGcCGCcGACGAc -3' miRNA: 3'- -CCGcGGCGCGUC--UUGU-GUGuCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 133565 | 0.69 | 0.740863 |
Target: 5'- gGGUGCaGCugGCcaAGAGCACGCAGACGu- -3' miRNA: 3'- -CCGCGgCG--CG--UCUUGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 120370 | 0.69 | 0.740863 |
Target: 5'- gGGCgagGCUGUGCAcGACGCAgCGGGCGAu -3' miRNA: 3'- -CCG---CGGCGCGUcUUGUGU-GUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 58390 | 0.69 | 0.749621 |
Target: 5'- cGGaGCCGCGuCAGAcccucgcGCgGCGCAGGCGGc -3' miRNA: 3'- -CCgCGGCGC-GUCU-------UG-UGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 135738 | 0.69 | 0.750589 |
Target: 5'- aGGUuaUGCGCGacGCGCugAGACGAAu -3' miRNA: 3'- -CCGcgGCGCGUcuUGUGugUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 26375 | 0.69 | 0.750589 |
Target: 5'- cGgGCCGCgGCGGGaguucuGCGCGCGGGCGc- -3' miRNA: 3'- cCgCGGCG-CGUCU------UGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150569 | 0.69 | 0.750589 |
Target: 5'- cGGgGCC-CGCGGGgcgGCGCGgAGACGGc -3' miRNA: 3'- -CCgCGGcGCGUCU---UGUGUgUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 26306 | 0.69 | 0.76021 |
Target: 5'- cGCGCCGCuGCGGcccgucuacguGGCGCugGGGCGc- -3' miRNA: 3'- cCGCGGCG-CGUC-----------UUGUGugUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 75539 | 0.69 | 0.76021 |
Target: 5'- uGGCGUccaCGCGCAuGAGcCugGCGGACGu- -3' miRNA: 3'- -CCGCG---GCGCGU-CUU-GugUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 52499 | 0.69 | 0.76021 |
Target: 5'- cGCGCCgGCGCAgGGACgACGCGG-CGGc -3' miRNA: 3'- cCGCGG-CGCGU-CUUG-UGUGUCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 129294 | 0.69 | 0.769717 |
Target: 5'- aGGCaCCGCGCGG---GCGCGGAgGAGg -3' miRNA: 3'- -CCGcGGCGCGUCuugUGUGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1376 | 0.69 | 0.769717 |
Target: 5'- cGGCGUCGCGCcccAGcgcCACGUAGACGGg -3' miRNA: 3'- -CCGCGGCGCG---UCuu-GUGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 21956 | 0.69 | 0.769717 |
Target: 5'- gGGCGgaGCGCGGGAUgACGCGGGCc-- -3' miRNA: 3'- -CCGCggCGCGUCUUG-UGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 64900 | 0.69 | 0.769717 |
Target: 5'- cGCGCCcCGC-GAACGCACAGcGCGu- -3' miRNA: 3'- cCGCGGcGCGuCUUGUGUGUC-UGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 78569 | 0.69 | 0.769717 |
Target: 5'- aGGCgcugGCCGCGCGcGAGCGC-CGGGCc-- -3' miRNA: 3'- -CCG----CGGCGCGU-CUUGUGuGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 69498 | 0.69 | 0.769717 |
Target: 5'- gGGCGg-GCGCAGGACGCGcCGGAgCGGGg -3' miRNA: 3'- -CCGCggCGCGUCUUGUGU-GUCU-GCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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