miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 145657 1.08 0.002971
Target:  5'- cGGCGCCGCGCAGAACACACAGACGAAc -3'
miRNA:   3'- -CCGCGGCGCGUCUUGUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 37195 0.78 0.284018
Target:  5'- aGGCGCCGCGCcGAACG-ACGGGCGc- -3'
miRNA:   3'- -CCGCGGCGCGuCUUGUgUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 2937 0.76 0.381455
Target:  5'- cGCaGCuCGCGCAGccaGGCGCGCAGGCGGGg -3'
miRNA:   3'- cCG-CG-GCGCGUC---UUGUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 47589 0.76 0.365097
Target:  5'- aGCGCCGCGCGGGACcCAC-GAgGAGc -3'
miRNA:   3'- cCGCGGCGCGUCUUGuGUGuCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 8886 0.75 0.389815
Target:  5'- gGGCGCUG-GCGGAGgGCGgAGGCGAAg -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 96967 0.75 0.406891
Target:  5'- aGGCGCUgGCGCGGAcCGCGgCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGUCUuGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 11876 0.75 0.398294
Target:  5'- cGCGCugccgacccauaCGCGCAGGACAUACAGACc-- -3'
miRNA:   3'- cCGCG------------GCGCGUCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 52738 0.75 0.424429
Target:  5'- cGCGCCGcCGCGGAACACGUGGACc-- -3'
miRNA:   3'- cCGCGGC-GCGUCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 42764 0.74 0.479616
Target:  5'- gGGCGgCGCGCGGGGCcgACAGGCGc- -3'
miRNA:   3'- -CCGCgGCGCGUCUUGugUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 23505 0.74 0.458028
Target:  5'- aGCGCCGCagaccacgccgcggGCGGGACccucgGCGCGGACGAc -3'
miRNA:   3'- cCGCGGCG--------------CGUCUUG-----UGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 79115 0.74 0.489156
Target:  5'- gGGCGCCaaggGCGCcGAGCGCGCGGAgGc- -3'
miRNA:   3'- -CCGCGG----CGCGuCUUGUGUGUCUgCuu -5'
5108 5' -56.2 NC_001798.1 + 2203 0.73 0.495887
Target:  5'- aGGcCGCCGCGCGGcgcagcgggcccgaGGCGCGCAG-CGGg -3'
miRNA:   3'- -CC-GCGGCGCGUC--------------UUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 85256 0.73 0.528152
Target:  5'- cGCgGCCGCGCGGGGC-CGCGcGCGAGg -3'
miRNA:   3'- cCG-CGGCGCGUCUUGuGUGUcUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 4358 0.73 0.508496
Target:  5'- aGCGCCgGCGgGGGGCGCGCcGGCGGc -3'
miRNA:   3'- cCGCGG-CGCgUCUUGUGUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 31998 0.73 0.498785
Target:  5'- cGGCGCCGCGCcGGGCcccggacucggACuCGGGCGAc -3'
miRNA:   3'- -CCGCGGCGCGuCUUG-----------UGuGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 27520 0.72 0.575344
Target:  5'- gGGCGCC-CGCGGGaaggcagccccgcgGCGCGCGGGgGGAg -3'
miRNA:   3'- -CCGCGGcGCGUCU--------------UGUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 11948 0.72 0.56723
Target:  5'- cGGCuGCCGCGCcagacccagcuccAGGGCGgAUAGGCGGGg -3'
miRNA:   3'- -CCG-CGGCGCG-------------UCUUGUgUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 150431 0.72 0.578394
Target:  5'- cGGCGCgGgGCGGAcuccggACGCGCGGgGCGAc -3'
miRNA:   3'- -CCGCGgCgCGUCU------UGUGUGUC-UGCUu -5'
5108 5' -56.2 NC_001798.1 + 31217 0.72 0.578394
Target:  5'- uGGCGCCcCGCGGAGCAgcaGCAGcgGCGGc -3'
miRNA:   3'- -CCGCGGcGCGUCUUGUg--UGUC--UGCUu -5'
5108 5' -56.2 NC_001798.1 + 9652 0.72 0.598806
Target:  5'- aGGCGCagcgggccgCGCGCGGAGgGCGCGGgAUGGGg -3'
miRNA:   3'- -CCGCG---------GCGCGUCUUgUGUGUC-UGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.