miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 76534 0.72 0.558137
Target:  5'- cGGCGCuCGCGCAGcAGCugGaCAG-CGAc -3'
miRNA:   3'- -CCGCG-GCGCGUC-UUGugU-GUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 11948 0.72 0.56723
Target:  5'- cGGCuGCCGCGCcagacccagcuccAGGGCGgAUAGGCGGGg -3'
miRNA:   3'- -CCG-CGGCGCG-------------UCUUGUgUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 26485 0.71 0.619317
Target:  5'- gGGCGUCGgcCGCGGGccGCGCGgGGACGGu -3'
miRNA:   3'- -CCGCGGC--GCGUCU--UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 150811 0.71 0.654241
Target:  5'- gGGCGCCGCcgcugcugcugcuccGCGGGGCGC-CAGGgGGc -3'
miRNA:   3'- -CCGCGGCG---------------CGUCUUGUGuGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 58844 0.71 0.639867
Target:  5'- aGCGCCGCGUAGGcggccccgaGCGC-CAGGCa-- -3'
miRNA:   3'- cCGCGGCGCGUCU---------UGUGuGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 25101 0.71 0.629591
Target:  5'- cGGCGCCccGCGCcccccgaagaAGAGcCGCGCGGACGc- -3'
miRNA:   3'- -CCGCGG--CGCG----------UCUU-GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 4037 0.71 0.64911
Target:  5'- cGGCcaccGCCGCGCGGGcccggcgGCGCucCAGGCGGc -3'
miRNA:   3'- -CCG----CGGCGCGUCU-------UGUGu-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 133672 0.71 0.639867
Target:  5'- aGCGCC-UGCcGGACGCACAGACa-- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 71561 0.71 0.609053
Target:  5'- gGGCGCCaGCGagcacACGCACGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCgucu-UGUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 24550 0.71 0.647057
Target:  5'- cGGCGCCgGCGguGGuggcggcggccggcGCGCGgAGGCGGg -3'
miRNA:   3'- -CCGCGG-CGCguCU--------------UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 22267 0.71 0.608027
Target:  5'- cGCGCCGgGCgcuaaugAGAugcCGCGCGGGCGGAg -3'
miRNA:   3'- cCGCGGCgCG-------UCUu--GUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 25728 0.71 0.619317
Target:  5'- cGGCGCCcccgacgucucgGCGCuGGGCGCGCAGgGCGu- -3'
miRNA:   3'- -CCGCGG------------CGCGuCUUGUGUGUC-UGCuu -5'
5108 5' -56.2 NC_001798.1 + 38184 0.71 0.638839
Target:  5'- uGGgGCCGCuggucgaGCAGGAgGCGCGGACu-- -3'
miRNA:   3'- -CCgCGGCG-------CGUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 153032 0.7 0.680825
Target:  5'- gGGC-CCGCGCGGcGGCGCGCGGuuGGc -3'
miRNA:   3'- -CCGcGGCGCGUC-UUGUGUGUCugCUu -5'
5108 5' -56.2 NC_001798.1 + 147095 0.7 0.690986
Target:  5'- cGGCGCCGCGCGuu-CGCGaaaGGcGCGAAa -3'
miRNA:   3'- -CCGCGGCGCGUcuuGUGUg--UC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 29403 0.7 0.690986
Target:  5'- cGCGCCG-GCGGGGCGC-CGGGgGGAc -3'
miRNA:   3'- cCGCGGCgCGUCUUGUGuGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 36528 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36490 0.7 0.690986
Target:  5'- gGGCGCCgGCGCG----ACGCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGUcuugUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 77787 0.7 0.680825
Target:  5'- uGCGCCGCcuGCAGGcGCugGCGGGCa-- -3'
miRNA:   3'- cCGCGGCG--CGUCU-UGugUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 149982 0.7 0.690986
Target:  5'- gGGCGCgGCGCccgcGGACGCcgGGGCGAGc -3'
miRNA:   3'- -CCGCGgCGCGu---CUUGUGugUCUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.