miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 154105 0.68 0.590855
Target:  5'- gCGgCCGGCGCcggggaccccGGCGGCGGGgaccccgGCGgcggGAc -3'
miRNA:   3'- -GCgGGCUGCG----------UCGCCGCUCa------CGCa---CU- -5'
5109 3' -61.2 NC_001798.1 + 153783 0.68 0.590855
Target:  5'- gGCCCGcgcuccuugcGCgGCGGCGGCGGGgggcagGCGg-- -3'
miRNA:   3'- gCGGGC----------UG-CGUCGCCGCUCa-----CGCacu -5'
5109 3' -61.2 NC_001798.1 + 153220 0.68 0.571381
Target:  5'- cCGCCCGAcggcccgggccCGCGGCGGCgGAGgacccGCGc-- -3'
miRNA:   3'- -GCGGGCU-----------GCGUCGCCG-CUCa----CGCacu -5'
5109 3' -61.2 NC_001798.1 + 153064 0.7 0.477206
Target:  5'- cCGCCCccuggggcgGGCGgAGCGGCGGG-GCGg-- -3'
miRNA:   3'- -GCGGG---------CUGCgUCGCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 153033 0.7 0.459264
Target:  5'- gGCCCG-CGCGGCGGCGc--GCGg-- -3'
miRNA:   3'- gCGGGCuGCGUCGCCGCucaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 150572 0.67 0.659541
Target:  5'- gGCCCG-CGgGGCGGCGcGgagacgGCGgggGAg -3'
miRNA:   3'- gCGGGCuGCgUCGCCGCuCa-----CGCa--CU- -5'
5109 3' -61.2 NC_001798.1 + 149989 0.67 0.63991
Target:  5'- gCGCCCgcgGACGCcGgGGCGAGcgGCccGUGGc -3'
miRNA:   3'- -GCGGG---CUGCGuCgCCGCUCa-CG--CACU- -5'
5109 3' -61.2 NC_001798.1 + 147992 0.66 0.717699
Target:  5'- uGCCCGGCcaCAGCcGUGGGUGUGg-- -3'
miRNA:   3'- gCGGGCUGc-GUCGcCGCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 147173 0.68 0.581101
Target:  5'- cCGCCCGGCGCcgGGCGGa-AG-GCGUc- -3'
miRNA:   3'- -GCGGGCUGCG--UCGCCgcUCaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 146028 0.68 0.552066
Target:  5'- aGCCaaGGCGCGGUGG-GGG-GCGUGGu -3'
miRNA:   3'- gCGGg-CUGCGUCGCCgCUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 145818 0.66 0.679091
Target:  5'- aCG-CgGGCGCGGCGGCGGucgGgGUGGg -3'
miRNA:   3'- -GCgGgCUGCGUCGCCGCUca-CgCACU- -5'
5109 3' -61.2 NC_001798.1 + 144688 0.98 0.00653
Target:  5'- uCGCCCGACGCAGCGGCGAGUGC-UGAg -3'
miRNA:   3'- -GCGGGCUGCGUCGCCGCUCACGcACU- -5'
5109 3' -61.2 NC_001798.1 + 142490 0.69 0.504748
Target:  5'- -cCCCGAgGCGGCGcGgGGGUGCGa-- -3'
miRNA:   3'- gcGGGCUgCGUCGC-CgCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 142135 0.66 0.688816
Target:  5'- uGCCgGACGCGGCacaGGUG-GUGCacGUGu -3'
miRNA:   3'- gCGGgCUGCGUCG---CCGCuCACG--CACu -5'
5109 3' -61.2 NC_001798.1 + 139336 0.66 0.697532
Target:  5'- gCGCCCGcGCGCgcugugcggccauGGCGGCGuccgGCGggGAg -3'
miRNA:   3'- -GCGGGC-UGCG-------------UCGCCGCuca-CGCa-CU- -5'
5109 3' -61.2 NC_001798.1 + 126044 0.67 0.610439
Target:  5'- gCGCCUgGACGCGGCGGaCGAucgucuUGCG-GAc -3'
miRNA:   3'- -GCGGG-CUGCGUCGCC-GCUc-----ACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 125411 0.69 0.503819
Target:  5'- cCGCgCGACgGCcgagaagAGCGGCGAGUGCucgcagcagucGUGGa -3'
miRNA:   3'- -GCGgGCUG-CG-------UCGCCGCUCACG-----------CACU- -5'
5109 3' -61.2 NC_001798.1 + 124357 0.68 0.581101
Target:  5'- cCGCCCGAC-CAGCGcCGGGUGgCGc-- -3'
miRNA:   3'- -GCGGGCUGcGUCGCcGCUCAC-GCacu -5'
5109 3' -61.2 NC_001798.1 + 122069 0.66 0.717699
Target:  5'- gCGUCgGACGCGGaGGCG-GUGC-UGGc -3'
miRNA:   3'- -GCGGgCUGCGUCgCCGCuCACGcACU- -5'
5109 3' -61.2 NC_001798.1 + 121292 0.66 0.679091
Target:  5'- cCGcCCCGACGguGgGGCGGccGCGa-- -3'
miRNA:   3'- -GC-GGGCUGCguCgCCGCUcaCGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.