Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 19727 | 0.69 | 0.455877 |
Target: 5'- aCCGGGCUGggggucccGCGCUcaUGGCCGGaGAaaugugUGGc -3' miRNA: 3'- -GGUCCGGCa-------CGCGG--ACCGGCC-CU------ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 2325 | 0.69 | 0.482398 |
Target: 5'- -aGGGCCGgGCGCCacGGCgCGGGGaagagcgggUGGu -3' miRNA: 3'- ggUCCGGCaCGCGGa-CCG-GCCCU---------ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 32883 | 0.69 | 0.438639 |
Target: 5'- aCCAccGGCCGagGCGCCUcgggGGCaggGGGAggUGGg -3' miRNA: 3'- -GGU--CCGGCa-CGCGGA----CCGg--CCCU--ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 93983 | 0.69 | 0.438639 |
Target: 5'- aCCAGGCgGUGC-CCacGGCCcugGGGAggcUGGa -3' miRNA: 3'- -GGUCCGgCACGcGGa-CCGG---CCCU---ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 115581 | 0.69 | 0.472584 |
Target: 5'- gCCuGGCgGcaGCGCCUcgcccacGGCCGGGuccgGUGGg -3' miRNA: 3'- -GGuCCGgCa-CGCGGA-------CCGGCCC----UACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 121534 | 0.69 | 0.438639 |
Target: 5'- aCAcGGUCGcggcgcUGCGCCUGGCgUGGGGcccgUGGg -3' miRNA: 3'- gGU-CCGGC------ACGCGGACCG-GCCCU----ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 27769 | 0.69 | 0.464631 |
Target: 5'- cCCGGGCUGcGCacGCCa-GCCGGGAcGGg -3' miRNA: 3'- -GGUCCGGCaCG--CGGacCGGCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 123920 | 0.69 | 0.447212 |
Target: 5'- uCCGGGgCGUGCuguGCCcugGGuCCGGGGgccUGGu -3' miRNA: 3'- -GGUCCgGCACG---CGGa--CC-GGCCCU---ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 3005 | 0.69 | 0.482398 |
Target: 5'- cCCGGGCgCGgggGCGCggcgGGCCGGGcuccGGc -3' miRNA: 3'- -GGUCCG-GCa--CGCGga--CCGGCCCua--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 72150 | 0.69 | 0.473472 |
Target: 5'- cCCGGGCCG-GCGUCgGGCCcacgaugcaGAUGGc -3' miRNA: 3'- -GGUCCGGCaCGCGGaCCGGcc-------CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 20346 | 0.69 | 0.473472 |
Target: 5'- gCAGGCgGUugGCGCU--GCCGGGcgGGu -3' miRNA: 3'- gGUCCGgCA--CGCGGacCGGCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 4094 | 0.69 | 0.464631 |
Target: 5'- uCCGGGCCGgggcGgGCUcGGCCcuGGGcgGGc -3' miRNA: 3'- -GGUCCGGCa---CgCGGaCCGG--CCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 52564 | 0.69 | 0.447212 |
Target: 5'- --cGGCUGcUGgGCCUGGCCGacacGGUGGu -3' miRNA: 3'- gguCCGGC-ACgCGGACCGGCc---CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 29993 | 0.68 | 0.500486 |
Target: 5'- -uGGGCCGUGCGCC--GCCccccgacccucuGGGggGGc -3' miRNA: 3'- ggUCCGGCACGCGGacCGG------------CCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 79179 | 0.68 | 0.500486 |
Target: 5'- aCCGccCUGUGCGCCcGGCugCGGGAUGa -3' miRNA: 3'- -GGUccGGCACGCGGaCCG--GCCCUACc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 110295 | 0.68 | 0.500486 |
Target: 5'- -gGGGCCGUguuucuGCGCUacaccccGGCCGGGGaGGu -3' miRNA: 3'- ggUCCGGCA------CGCGGa------CCGGCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 26200 | 0.68 | 0.508723 |
Target: 5'- gCCGGGCCGc-CGCCUcgGGCgCGGGcgacgccAUGGc -3' miRNA: 3'- -GGUCCGGCacGCGGA--CCG-GCCC-------UACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 151138 | 0.68 | 0.509642 |
Target: 5'- gCCAGGUcaucguccucguCGUccGUGCCgGGCCacgggGGGGUGGg -3' miRNA: 3'- -GGUCCG------------GCA--CGCGGaCCGG-----CCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 25592 | 0.68 | 0.509642 |
Target: 5'- aCCuGGCCGcGgGCC-GcGCCGGGGgcgGGc -3' miRNA: 3'- -GGuCCGGCaCgCGGaC-CGGCCCUa--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 154289 | 0.68 | 0.517942 |
Target: 5'- cCCGGGCCGUGuUGCg-GGCCcucuuaaGGGgcGGc -3' miRNA: 3'- -GGUCCGGCAC-GCGgaCCGG-------CCCuaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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