miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 79179 0.68 0.500486
Target:  5'- aCCGccCUGUGCGCCcGGCugCGGGAUGa -3'
miRNA:   3'- -GGUccGGCACGCGGaCCG--GCCCUACc -5'
5111 3' -62.8 NC_001798.1 + 110295 0.68 0.500486
Target:  5'- -gGGGCCGUguuucuGCGCUacaccccGGCCGGGGaGGu -3'
miRNA:   3'- ggUCCGGCA------CGCGGa------CCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 25494 0.68 0.491403
Target:  5'- cUCGGGcCCGcUGCGCCgcgcggcGGCCuGGAUGc -3'
miRNA:   3'- -GGUCC-GGC-ACGCGGa------CCGGcCCUACc -5'
5111 3' -62.8 NC_001798.1 + 148290 0.68 0.491403
Target:  5'- gCGGGCagGUGUGC--GGgCGGGGUGGg -3'
miRNA:   3'- gGUCCGg-CACGCGgaCCgGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 36149 0.68 0.491403
Target:  5'- -gGGGCgCG-GCGgC-GGUCGGGGUGGg -3'
miRNA:   3'- ggUCCG-GCaCGCgGaCCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 115029 0.68 0.491403
Target:  5'- -aAGGCCGUGCggaGCCUGGaCGacGUGGg -3'
miRNA:   3'- ggUCCGGCACG---CGGACCgGCccUACC- -5'
5111 3' -62.8 NC_001798.1 + 3005 0.69 0.482398
Target:  5'- cCCGGGCgCGgggGCGCggcgGGCCGGGcuccGGc -3'
miRNA:   3'- -GGUCCG-GCa--CGCGga--CCGGCCCua--CC- -5'
5111 3' -62.8 NC_001798.1 + 2325 0.69 0.482398
Target:  5'- -aGGGCCGgGCGCCacGGCgCGGGGaagagcgggUGGu -3'
miRNA:   3'- ggUCCGGCaCGCGGa-CCG-GCCCU---------ACC- -5'
5111 3' -62.8 NC_001798.1 + 72150 0.69 0.473472
Target:  5'- cCCGGGCCG-GCGUCgGGCCcacgaugcaGAUGGc -3'
miRNA:   3'- -GGUCCGGCaCGCGGaCCGGcc-------CUACC- -5'
5111 3' -62.8 NC_001798.1 + 20346 0.69 0.473472
Target:  5'- gCAGGCgGUugGCGCU--GCCGGGcgGGu -3'
miRNA:   3'- gGUCCGgCA--CGCGGacCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 115581 0.69 0.472584
Target:  5'- gCCuGGCgGcaGCGCCUcgcccacGGCCGGGuccgGUGGg -3'
miRNA:   3'- -GGuCCGgCa-CGCGGA-------CCGGCCC----UACC- -5'
5111 3' -62.8 NC_001798.1 + 27769 0.69 0.464631
Target:  5'- cCCGGGCUGcGCacGCCa-GCCGGGAcGGg -3'
miRNA:   3'- -GGUCCGGCaCG--CGGacCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 4094 0.69 0.464631
Target:  5'- uCCGGGCCGgggcGgGCUcGGCCcuGGGcgGGc -3'
miRNA:   3'- -GGUCCGGCa---CgCGGaCCGG--CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 19727 0.69 0.455877
Target:  5'- aCCGGGCUGggggucccGCGCUcaUGGCCGGaGAaaugugUGGc -3'
miRNA:   3'- -GGUCCGGCa-------CGCGG--ACCGGCC-CU------ACC- -5'
5111 3' -62.8 NC_001798.1 + 123920 0.69 0.447212
Target:  5'- uCCGGGgCGUGCuguGCCcugGGuCCGGGGgccUGGu -3'
miRNA:   3'- -GGUCCgGCACG---CGGa--CC-GGCCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 52564 0.69 0.447212
Target:  5'- --cGGCUGcUGgGCCUGGCCGacacGGUGGu -3'
miRNA:   3'- gguCCGGC-ACgCGGACCGGCc---CUACC- -5'
5111 3' -62.8 NC_001798.1 + 93983 0.69 0.438639
Target:  5'- aCCAGGCgGUGC-CCacGGCCcugGGGAggcUGGa -3'
miRNA:   3'- -GGUCCGgCACGcGGa-CCGG---CCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 121534 0.69 0.438639
Target:  5'- aCAcGGUCGcggcgcUGCGCCUGGCgUGGGGcccgUGGg -3'
miRNA:   3'- gGU-CCGGC------ACGCGGACCG-GCCCU----ACC- -5'
5111 3' -62.8 NC_001798.1 + 32883 0.69 0.438639
Target:  5'- aCCAccGGCCGagGCGCCUcgggGGCaggGGGAggUGGg -3'
miRNA:   3'- -GGU--CCGGCa-CGCGGA----CCGg--CCCU--ACC- -5'
5111 3' -62.8 NC_001798.1 + 6304 0.7 0.430162
Target:  5'- aCGGGCCGgggggacGgGCCggggggacgGGCCGGGG-GGa -3'
miRNA:   3'- gGUCCGGCa------CgCGGa--------CCGGCCCUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.