miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 5' -55.2 NC_001798.1 + 135069 0.66 0.93142
Target:  5'- cUCCUGCCCGccuuucgGGaAGCgGuCGCGCGg -3'
miRNA:   3'- cAGGACGGGCua-----CUaUUGgU-GCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 118809 0.66 0.93142
Target:  5'- -gCCUGCCCcGUGG--ACCugGgGCu -3'
miRNA:   3'- caGGACGGGcUACUauUGGugCgCGu -5'
5111 5' -55.2 NC_001798.1 + 76893 0.66 0.926131
Target:  5'- -cCCUGCCCGcgGGguggaccGACCugGC-CGa -3'
miRNA:   3'- caGGACGGGCuaCUa------UUGGugCGcGU- -5'
5111 5' -55.2 NC_001798.1 + 50090 0.66 0.926131
Target:  5'- cUCCUGCggaggCCGGgcUGGUGGCgC-CGCGCAu -3'
miRNA:   3'- cAGGACG-----GGCU--ACUAUUG-GuGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 28589 0.66 0.920598
Target:  5'- aUCUggugGCCUGGgaGAcGGCCGCGCGCc -3'
miRNA:   3'- cAGGa---CGGGCUa-CUaUUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 47573 0.66 0.920598
Target:  5'- aGUCgUGUCCGcgGGaagcGCCGCGCGgGa -3'
miRNA:   3'- -CAGgACGGGCuaCUau--UGGUGCGCgU- -5'
5111 5' -55.2 NC_001798.1 + 153027 0.66 0.914821
Target:  5'- aGUCCggGCCCGcgc--GGCgGCGCGCGg -3'
miRNA:   3'- -CAGGa-CGGGCuacuaUUGgUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 127035 0.66 0.914821
Target:  5'- cGUCCUGgCCGAcuuUAGCCugGUGa- -3'
miRNA:   3'- -CAGGACgGGCUacuAUUGGugCGCgu -5'
5111 5' -55.2 NC_001798.1 + 52819 0.66 0.914821
Target:  5'- uUCCUGCUCGAa---GACCugGCGg- -3'
miRNA:   3'- cAGGACGGGCUacuaUUGGugCGCgu -5'
5111 5' -55.2 NC_001798.1 + 137944 0.67 0.902542
Target:  5'- -gCC-GCCCGGUcc--GCCGCGCGCu -3'
miRNA:   3'- caGGaCGGGCUAcuauUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 27477 0.67 0.901903
Target:  5'- cGUCCUGCCgCGcgGGggcgGgcgcgggaaaaaaGCCGCGCGgGg -3'
miRNA:   3'- -CAGGACGG-GCuaCUa---U-------------UGGUGCGCgU- -5'
5111 5' -55.2 NC_001798.1 + 88848 0.67 0.896043
Target:  5'- aUCUcGCggCCGAUGGUcgucacgguggcGGCCACGUGCAg -3'
miRNA:   3'- cAGGaCG--GGCUACUA------------UUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 78549 0.67 0.896043
Target:  5'- gGUCauggcggGCCUGcgGGaggcgcUGGCCGCGCGCGa -3'
miRNA:   3'- -CAGga-----CGGGCuaCU------AUUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 2173 0.67 0.88931
Target:  5'- cGUCCU-CCgGGUcGGgcACCugGCGCAu -3'
miRNA:   3'- -CAGGAcGGgCUA-CUauUGGugCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 52574 0.67 0.88931
Target:  5'- -gCCUGgCCGAcacGGUggUCGCGUGCGu -3'
miRNA:   3'- caGGACgGGCUa--CUAuuGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 85254 0.67 0.882346
Target:  5'- -cCCgcgGCCgCGcgGG--GCCGCGCGCGa -3'
miRNA:   3'- caGGa--CGG-GCuaCUauUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 118078 0.67 0.882346
Target:  5'- -cCCUGCUacgcagcgcccgCGAUGggGAggcCCACGCGCGa -3'
miRNA:   3'- caGGACGG------------GCUACuaUU---GGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 74262 0.67 0.875154
Target:  5'- -gCCUGCCCGcgGGaacGCC-CGCGUu -3'
miRNA:   3'- caGGACGGGCuaCUau-UGGuGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 54782 0.67 0.875154
Target:  5'- cUgCUGCCCGAcGAUGAcgccgccaugcCCGCGgGCGu -3'
miRNA:   3'- cAgGACGGGCUaCUAUU-----------GGUGCgCGU- -5'
5111 5' -55.2 NC_001798.1 + 44616 0.67 0.873689
Target:  5'- cUCCUGUUCGGUGGgcgcgcccguggGGCCAUuggGCGCAu -3'
miRNA:   3'- cAGGACGGGCUACUa-----------UUGGUG---CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.