Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5111 | 5' | -55.2 | NC_001798.1 | + | 118809 | 0.66 | 0.93142 |
Target: 5'- -gCCUGCCCcGUGG--ACCugGgGCu -3' miRNA: 3'- caGGACGGGcUACUauUGGugCgCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 135069 | 0.66 | 0.93142 |
Target: 5'- cUCCUGCCCGccuuucgGGaAGCgGuCGCGCGg -3' miRNA: 3'- cAGGACGGGCua-----CUaUUGgU-GCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 76893 | 0.66 | 0.926131 |
Target: 5'- -cCCUGCCCGcgGGguggaccGACCugGC-CGa -3' miRNA: 3'- caGGACGGGCuaCUa------UUGGugCGcGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 50090 | 0.66 | 0.926131 |
Target: 5'- cUCCUGCggaggCCGGgcUGGUGGCgC-CGCGCAu -3' miRNA: 3'- cAGGACG-----GGCU--ACUAUUG-GuGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 47573 | 0.66 | 0.920598 |
Target: 5'- aGUCgUGUCCGcgGGaagcGCCGCGCGgGa -3' miRNA: 3'- -CAGgACGGGCuaCUau--UGGUGCGCgU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 28589 | 0.66 | 0.920598 |
Target: 5'- aUCUggugGCCUGGgaGAcGGCCGCGCGCc -3' miRNA: 3'- cAGGa---CGGGCUa-CUaUUGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 153027 | 0.66 | 0.914821 |
Target: 5'- aGUCCggGCCCGcgc--GGCgGCGCGCGg -3' miRNA: 3'- -CAGGa-CGGGCuacuaUUGgUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 127035 | 0.66 | 0.914821 |
Target: 5'- cGUCCUGgCCGAcuuUAGCCugGUGa- -3' miRNA: 3'- -CAGGACgGGCUacuAUUGGugCGCgu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 52819 | 0.66 | 0.914821 |
Target: 5'- uUCCUGCUCGAa---GACCugGCGg- -3' miRNA: 3'- cAGGACGGGCUacuaUUGGugCGCgu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 137944 | 0.67 | 0.902542 |
Target: 5'- -gCC-GCCCGGUcc--GCCGCGCGCu -3' miRNA: 3'- caGGaCGGGCUAcuauUGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 27477 | 0.67 | 0.901903 |
Target: 5'- cGUCCUGCCgCGcgGGggcgGgcgcgggaaaaaaGCCGCGCGgGg -3' miRNA: 3'- -CAGGACGG-GCuaCUa---U-------------UGGUGCGCgU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 88848 | 0.67 | 0.896043 |
Target: 5'- aUCUcGCggCCGAUGGUcgucacgguggcGGCCACGUGCAg -3' miRNA: 3'- cAGGaCG--GGCUACUA------------UUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 78549 | 0.67 | 0.896043 |
Target: 5'- gGUCauggcggGCCUGcgGGaggcgcUGGCCGCGCGCGa -3' miRNA: 3'- -CAGga-----CGGGCuaCU------AUUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 2173 | 0.67 | 0.88931 |
Target: 5'- cGUCCU-CCgGGUcGGgcACCugGCGCAu -3' miRNA: 3'- -CAGGAcGGgCUA-CUauUGGugCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 52574 | 0.67 | 0.88931 |
Target: 5'- -gCCUGgCCGAcacGGUggUCGCGUGCGu -3' miRNA: 3'- caGGACgGGCUa--CUAuuGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 118078 | 0.67 | 0.882346 |
Target: 5'- -cCCUGCUacgcagcgcccgCGAUGggGAggcCCACGCGCGa -3' miRNA: 3'- caGGACGG------------GCUACuaUU---GGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 85254 | 0.67 | 0.882346 |
Target: 5'- -cCCgcgGCCgCGcgGG--GCCGCGCGCGa -3' miRNA: 3'- caGGa--CGG-GCuaCUauUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 74262 | 0.67 | 0.875154 |
Target: 5'- -gCCUGCCCGcgGGaacGCC-CGCGUu -3' miRNA: 3'- caGGACGGGCuaCUau-UGGuGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 54782 | 0.67 | 0.875154 |
Target: 5'- cUgCUGCCCGAcGAUGAcgccgccaugcCCGCGgGCGu -3' miRNA: 3'- cAgGACGGGCUaCUAUU-----------GGUGCgCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 44616 | 0.67 | 0.873689 |
Target: 5'- cUCCUGUUCGGUGGgcgcgcccguggGGCCAUuggGCGCAu -3' miRNA: 3'- cAGGACGGGCUACUa-----------UUGGUG---CGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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