miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5112 5' -60.9 NC_001798.1 + 153781 0.66 0.752631
Target:  5'- gCGgCCCGCGCUccuugcgcGGCGGcggCGGGGggcaggCGg -3'
miRNA:   3'- -GCgGGGCGCGAa-------CUGCCa--GUCCCa-----GC- -5'
5112 5' -60.9 NC_001798.1 + 150903 0.68 0.617864
Target:  5'- cCGcCCCCGCGCcggGGCGcucuUCGGGGggCGg -3'
miRNA:   3'- -GC-GGGGCGCGaa-CUGCc---AGUCCCa-GC- -5'
5112 5' -60.9 NC_001798.1 + 147173 0.66 0.695933
Target:  5'- cCGCCCgGCGCcgGGCGGa-AGGcGUCc -3'
miRNA:   3'- -GCGGGgCGCGaaCUGCCagUCC-CAGc -5'
5112 5' -60.9 NC_001798.1 + 145818 0.67 0.64726
Target:  5'- aCGCgg-GCGCggcGGCGGUCGGGGUgGg -3'
miRNA:   3'- -GCGgggCGCGaa-CUGCCAGUCCCAgC- -5'
5112 5' -60.9 NC_001798.1 + 143891 1.08 0.001444
Target:  5'- cCGCCCCGCGCUUGACGGUCAGGGUCGu -3'
miRNA:   3'- -GCGGGGCGCGAACUGCCAGUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 135357 0.76 0.234917
Target:  5'- uGCCCCGCGCUccggcagcUGcuCGG-CGGGGUCa -3'
miRNA:   3'- gCGGGGCGCGA--------ACu-GCCaGUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 134994 0.66 0.705552
Target:  5'- uGgCCCGCGgUgGGCGc-CAGGGUCGu -3'
miRNA:   3'- gCgGGGCGCgAaCUGCcaGUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 132136 0.66 0.703633
Target:  5'- gGCCCUGCGCcgccgggggccGGCGGgCGGGG-CGc -3'
miRNA:   3'- gCGGGGCGCGaa---------CUGCCaGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 128429 0.69 0.521444
Target:  5'- cCGCCuCCaCGCUgcgGugGGgcgcgCAGGGUCc -3'
miRNA:   3'- -GCGG-GGcGCGAa--CugCCa----GUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 122795 0.69 0.570118
Target:  5'- aCGCCCUggccgugcugGCGCaucugggcggccagGGCGGUCGGGGgCGg -3'
miRNA:   3'- -GCGGGG----------CGCGaa------------CUGCCAGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 121292 0.68 0.608076
Target:  5'- cCGCCCCGaCGgUggGGCGGccgcgaacuUCcGGGUCGa -3'
miRNA:   3'- -GCGGGGC-GCgAa-CUGCC---------AGuCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 118608 0.72 0.389935
Target:  5'- gCGCCCCgaugccgcgGCGCUgcaGCGGUgCgAGGGUCGa -3'
miRNA:   3'- -GCGGGG---------CGCGAac-UGCCA-G-UCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 108555 0.69 0.530873
Target:  5'- gCGCCuCCGCGCUguuGCGGUCccGGGcCu -3'
miRNA:   3'- -GCGG-GGCGCGAac-UGCCAGu-CCCaGc -5'
5112 5' -60.9 NC_001798.1 + 107444 0.73 0.33353
Target:  5'- gCGaCCCCGCGCcccgaccccgagGACGGcgCGGGGUCu -3'
miRNA:   3'- -GC-GGGGCGCGaa----------CUGCCa-GUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 102376 0.68 0.627662
Target:  5'- aGCCCaCcCGCcUGGCGGUCGGcGG-CGa -3'
miRNA:   3'- gCGGG-GcGCGaACUGCCAGUC-CCaGC- -5'
5112 5' -60.9 NC_001798.1 + 102198 0.67 0.686266
Target:  5'- aGCCUgGCGCgcGGCGcGcCGGGaGUCGa -3'
miRNA:   3'- gCGGGgCGCGaaCUGC-CaGUCC-CAGC- -5'
5112 5' -60.9 NC_001798.1 + 102158 0.67 0.676557
Target:  5'- cCGCCCCcaccaGCGCcgUGAUGGUUucguGGGgccCGg -3'
miRNA:   3'- -GCGGGG-----CGCGa-ACUGCCAGu---CCCa--GC- -5'
5112 5' -60.9 NC_001798.1 + 101799 0.66 0.752631
Target:  5'- gGCCuCCGCGCcgGGCgccucgGGUUGGGGUa- -3'
miRNA:   3'- gCGG-GGCGCGaaCUG------CCAGUCCCAgc -5'
5112 5' -60.9 NC_001798.1 + 93269 0.67 0.666815
Target:  5'- gCGgCCCGCGCc-GGCGccGUCGGGG-CGu -3'
miRNA:   3'- -GCgGGGCGCGaaCUGC--CAGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 86246 0.68 0.608076
Target:  5'- gGCCaCCGUGCUgaaGcACGGcCGGGGgcgCGg -3'
miRNA:   3'- gCGG-GGCGCGAa--C-UGCCaGUCCCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.