miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 43296 0.67 0.685277
Target:  5'- ----cGGCCAGCuugaggaggcgcuuGACGauuCCGCAGGUCu -3'
miRNA:   3'- uugaaCCGGUCG--------------CUGUc--GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 30917 0.67 0.678172
Target:  5'- uGACcUGGCCgacGGUGAgGGCgGCggGGGUCg -3'
miRNA:   3'- -UUGaACCGG---UCGCUgUCGgCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 100287 0.67 0.677156
Target:  5'- cAGCUcgcGGCCGGgGACgugcuacAGCCGCccccuGGUCa -3'
miRNA:   3'- -UUGAa--CCGGUCgCUG-------UCGGCGu----CCAG- -5'
5114 3' -59 NC_001798.1 + 133462 0.67 0.657782
Target:  5'- aAGCgcgUGGCCgacgcccugAGCGGCuGCCccccgcGCGGGUCc -3'
miRNA:   3'- -UUGa--ACCGG---------UCGCUGuCGG------CGUCCAG- -5'
5114 3' -59 NC_001798.1 + 88402 0.67 0.657782
Target:  5'- cGCUcGGCUAacGCGGCGGCCGCuccGGa- -3'
miRNA:   3'- uUGAaCCGGU--CGCUGUCGGCGu--CCag -5'
5114 3' -59 NC_001798.1 + 117676 0.67 0.657782
Target:  5'- gGACgcgcGGCCGGCGGCGuGUaCGCGGGg- -3'
miRNA:   3'- -UUGaa--CCGGUCGCUGU-CG-GCGUCCag -5'
5114 3' -59 NC_001798.1 + 3310 0.67 0.647551
Target:  5'- cGACggcaacgGGgCGGCGGCGGCgGCGGGc- -3'
miRNA:   3'- -UUGaa-----CCgGUCGCUGUCGgCGUCCag -5'
5114 3' -59 NC_001798.1 + 2486 0.67 0.647551
Target:  5'- ----gGGCCGGCGGguCAgcGCCGCGGGg- -3'
miRNA:   3'- uugaaCCGGUCGCU--GU--CGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 102542 0.67 0.647551
Target:  5'- ----cGGCCGGCa--GGCCGCAcgcGGUCa -3'
miRNA:   3'- uugaaCCGGUCGcugUCGGCGU---CCAG- -5'
5114 3' -59 NC_001798.1 + 105277 0.67 0.647551
Target:  5'- -uCUUcGGCC-GCGGCcGCCGC-GGUCu -3'
miRNA:   3'- uuGAA-CCGGuCGCUGuCGGCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 95107 0.68 0.627061
Target:  5'- uGCUgcGGCCcGUGAUGGCCGCGcgcccgauGGUCg -3'
miRNA:   3'- uUGAa-CCGGuCGCUGUCGGCGU--------CCAG- -5'
5114 3' -59 NC_001798.1 + 27222 0.68 0.596375
Target:  5'- gGGCggGGCgCGGgggaGGCGGCCGCGGGg- -3'
miRNA:   3'- -UUGaaCCG-GUCg---CUGUCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 2546 0.69 0.576036
Target:  5'- gGGCgcGGCCcccgcgggAGgGGCGGCCGCGGGg- -3'
miRNA:   3'- -UUGaaCCGG--------UCgCUGUCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 88030 0.69 0.565923
Target:  5'- cGCUUGGCCGGgGAgggcagGGCCGCuGGg- -3'
miRNA:   3'- uUGAACCGGUCgCUg-----UCGGCGuCCag -5'
5114 3' -59 NC_001798.1 + 60172 0.69 0.565923
Target:  5'- cGCUUGGCCcGCcuucuuCAGCgCGCuGGUCa -3'
miRNA:   3'- uUGAACCGGuCGcu----GUCG-GCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 34608 0.69 0.565923
Target:  5'- gGACgcgGGCaaagGGCGGCGGCgGCGGGg- -3'
miRNA:   3'- -UUGaa-CCGg---UCGCUGUCGgCGUCCag -5'
5114 3' -59 NC_001798.1 + 97470 0.69 0.545844
Target:  5'- cGGCUgggGGCCGGCGGCGcGaCCGgGGGg- -3'
miRNA:   3'- -UUGAa--CCGGUCGCUGU-C-GGCgUCCag -5'
5114 3' -59 NC_001798.1 + 1721 0.69 0.545844
Target:  5'- ----aGGCCAGC-ACGGUgcggCGCAGGUCc -3'
miRNA:   3'- uugaaCCGGUCGcUGUCG----GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 2444 0.7 0.50643
Target:  5'- ----cGGCUGGCGGCgccAGCCGCccugcGGGUCg -3'
miRNA:   3'- uugaaCCGGUCGCUG---UCGGCG-----UCCAG- -5'
5114 3' -59 NC_001798.1 + 63 0.7 0.496763
Target:  5'- cGCgaaGGCgGGCGGCGGCgGCGGG-Cg -3'
miRNA:   3'- uUGaa-CCGgUCGCUGUCGgCGUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.